1. 2018
  2. Accelerating DNA Variant Calling Algorithms on High Performance Computing Systems

    Ren, S., 2018, 83 p.

    Research output: ThesisDissertation (TU Delft)Scientific

  3. An Efficient GPU-based de Bruijn Graph Construction Algorithm for Micro-Assembly

    Ren, S., Ahmed, N., Bertels, K. & Al-Ars, Z., 2018, Proceedings - 2018 IEEE 18th annual IEEE International Conference on BioInformatics and BioEngineering (BIBE 2018). Bourbakis, N. G. & Kavraki, D. (eds.). Piscataway, NJ, USA: IEEE, p. 67-72 6 p. 8567459

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  4. An Industrial Case Study of Low Cost Adaptive Voltage Scaling Using Delay Test Patterns

    Zandrahimi, M., Debaud, P., Castillejo, A. & Al-Ars, Z., 2018, Proceedings of the 2018 Design, Automation & Test in Europe Conference & Exhibition (DATE): Proceedings. IEEE, p. 999-1000 2 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  5. CAPI-Flash Accelerated Persistent Read Cache for Apache Cassandra

    Sendir, B., Govindaraju, M., Odaira, R. & Hofstee, P., 2018, In : IEEE International Conference on Cloud Computing, CLOUD. 2018-July, p. 220-228 9 p.

    Research output: Contribution to journalArticleScientificpeer-review

  6. Comparative Analysis of System-Level Acceleration Techniques in Bioinformatics: A Case Study of Accelerating the Smith-Waterman Algorithm for BWA-MEM

    Houtgast, E., Sima, V., Bertels, K. & Al-Ars, Z., 2018, 2018 IEEE 18th International Conference on BioInformatics and BioEngineering (BIBE). Bourbakis, N. G. & Kavraki, D. (eds.). Piscataway, NJ. USA: IEEE, p. 243-246 4 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  7. Cost Effective Adaptive Voltage Scaling Using Path Delay Fault Testing

    Zandrahimi, M., Debaud, P., Castillejo, A. & Al-Ars, Z., 2018, 2018 IEEE East-West Design and Test Symposium ( EWDTS). Danvers: IEEE, p. 1-6 6 p. 8524693

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  8. DIM-VEX: Exploiting Design Time Configurability and Runtime Reconfigurability

    Souza, J. D., Sartor, A. L., Carro, L., Rutzig, M. B., Wong, S. & Beck, A. C. S., 2018, Applied Reconfigurable Computing: Architectures, Tools, and Applications - 14th International Symposium, ARC 2018, Proceedings. Voros, N., Huebner, M., Keramidas, G., Goehringer, D., Antonpoulos, C. & Diniz, P. C. (eds.). Cham: Springer Verlag, p. 367-378 12 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10824 ).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  9. Dynamic Trade-off among Fault Tolerance, Energy Consumption, and Performance on a Multiple-issue VLIW Processor

    Sartor, A. L., Becker, P. H. E., Hoozemans, J., Wong, S. & Beck, A. C. S., 2018, In : IEEE Transactions on Multi-Scale Computing Systems. 4, 3, p. 327-339 13 p.

    Research output: Contribution to journalArticleScientificpeer-review

  10. Early DNA Variant Calling Using Incomplete DNA Datasets

    Al-Ars, Z., Ahmed, N. & Bertels, K., 2018, IPC No. G06F, Priority date 9 Nov 2016, Priority No. WO 2018088896

    Research output: PatentOther research output

  11. Efficient Acceleration of the Pair-HMMs Forward Algorithm for GATK HaplotypeCaller on Graphics Processing Units

    Ren, S., Bertels, K. & Al-Ars, Z., 2018, In : Evolutionary Bioinformatics. 14, p. 1-12 12 p.

    Research output: Contribution to journalArticleScientificpeer-review

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