1. 2020
  2. ESMRMB Round Table report on “Can Europe Lead in Machine Learning of MRI-Data?”

    Pizzini, F. B., Pesapane, F., Niessen, W., Geerts-Ossevoort, L. & Broeckx, N., 2020, In : Magnetic Resonance Materials in Physics, Biology and Medicine. 33, p. 217-219 3 p.

    Research output: Contribution to journalEditorialScientific

  3. Fast multi-component analysis using a joint sparsity constraint for MR fingerprinting

    Nagtegaal, M., Koken, P., Amthor, T. & Doneva, M., 2020, In : Magnetic Resonance in Medicine. 83, 2, p. 521-534

    Research output: Contribution to journalArticleScientificpeer-review

  4. Localization microscopy at doubled precision with patterned illumination

    Cnossen, J., Hinsdale, T., Thorsen, R., Siemons, M., Schueder, F., Jungmann, R., Smith, C. S., Rieger, B. & Stallinga, S., 2020, In : Nature Methods. 17, 1, p. 59-63

    Research output: Contribution to journalArticleScientificpeer-review

  5. Magnetic resonance fingerprinting for simultaneous renal T1 and T2* mapping in a single breath-hold

    Hermann, I., Chacon-Caldera, J., Brumer, I., Rieger, B., Weingärtner, S., Schad, L. R. & Zöllner, F. G., 2020, In : Magnetic Resonance in Medicine. 83, 6, p. 1940-1948 9 p.

    Research output: Contribution to journalArticleScientificpeer-review

  6. Spatial versus angular resolution for tractography-assisted planning of deep brain stimulation

    Liebrand, L. C., van Wingen, G. A., Vos, F. M., Denys, D. & Caan, M. W. A., 2020, In : NeuroImage: Clinical. 25, 102116.

    Research output: Contribution to journalArticleScientificpeer-review

  7. Three dimensional particle averaging for structural imaging of macromolecular complexes by localization microscopy

    Heydarian, H., Przybylski, A., Schreuder, F., Jungmann, R., Van Werkhoven, B., Keller-Findeisen, J., Ries, J., Stallinga, S., Bates, M. & Rieger, B., 2020, In : bioRxiv.

    Research output: Contribution to journalArticleScientific

  8. 2019
  9. Reconstructing 3D proton dose distribution using ionoacoustics

    van Dongen, K., de Blécourt, A., Lens, E., Schaart, D. & Vos, F., 15 Nov 2019, In : Physics in Medicine and Biology. 64, 22, 1 p., 225005.

    Research output: Contribution to journalArticleScientificpeer-review

  10. Gray Matter Age Prediction as a Biomarker for Risk of Dementia

    Wang, J., Knol, M. J., Tiulpin, A., Dubost, F., de Bruijne, M., Vernooij, M. W., Adams, H. H. H., Ikram, M. A., Niessen, W. J. & Roshchupkin, G. V., 15 Oct 2019, In : Proceedings of the National Academy of Sciences of the United States of America. 116, 42, p. 21213-21218

    Research output: Contribution to journalArticleScientificpeer-review

  11. Automated versus subjective assessment of spatial and temporal MRI small bowel motility in Crohn's disease

    Gollifer, R. M., Menys, A., Plumb, A., Mengoudi, K., Puylaert, C. A. J., Tielbeek, J. A. W., Ponsioen, C. Y., Vos, F. M., Stoker, J., Taylor, S. A. & Atkinson, D., 1 Oct 2019, In : Clinical Radiology. 74, 10, p. 814.e9-814.e19

    Research output: Contribution to journalArticleScientificpeer-review

  12. Sensor for microscopy

    Hulsken, B. & Stallinga, S., 16 Jul 2019, Patent No. US10353190B2

    Research output: PatentOther research output

  13. 3D regression neural network for the quantification of enlarged perivascular spaces in brain MRI

    Dubost, F., Adams, H., Bortsova, G., Ikram, M. A., Niessen, W., Niessen, W., Vernooij, M., de Bruijne, M. & de Bruijne, M., 2019, In : Medical Image Analysis. 51, p. 89-100

    Research output: Contribution to journalArticleScientificpeer-review

  14. A Hybrid Deep Learning Framework for Integrated Segmentation and Registration: Evaluation on Longitudinal White Matter Tract Changes

    Li, B., Niessen, W., Klein, S., de Groot, M., Arfan Ikram, M., Vernooij, M. & Bron, E. E., 2019, Medical Image Computing and Computer Assisted Intervention – MICCAI 2019 . Shen, D., Liu, T., Peters, T. M., Staib, L. H., Essert, C., Zhou, S., Yap, P-T. & Khan, A. (eds.). Springer, p. 645-653 (Lecture Notes in Computer Science ; vol. 11766).

    Research output: Chapter in Book/Conference proceedings/Edited volumeConference contributionScientificpeer-review

  15. A Multichannel Cross-Modal Fusion Framework for Electron Tomography

    Guo, Y., Aveyard, R. & Rieger, B., 2019, In : IEEE Transactions on Image Processing. 28, 9, p. 4206-4218 8673880.

    Research output: Contribution to journalArticleScientificpeer-review

  16. A genome-wide association study identifies genetic loci associated with specific lobar brain volumes

    van der Lee, S. J., Knol, M. J., Chauhan, G., Satizabal, C. L., Smith, A. V., Hofer, E., Bis, J. C., van den Akker, E. B., Niessen, W. J. & More Authors, 2019, In : Communications Biology. 2, 1, p. 1-9 9 p., 285.

    Research output: Contribution to journalArticleScientificpeer-review

  17. A pharmacokinetic model including arrival time for two inputs and compensating for varying applied flip-angle in dynamic gadoxetic acid-enhanced MR imaging

    Zhang, T., Runge, J. H., Lavini, C., Stoker, J., van Gulik, T., Cieslak, K. P., van Vliet, L. J. & Vos, F. M., 2019, In : PLoS ONE. 14, 8, 20 p., e0220835.

    Research output: Contribution to journalArticleScientificpeer-review

  18. Autofocus imaging

    Hulsken, B. & Stallinga, S., 2019, Patent No. US10365468B2

    Research output: PatentOther research output

  19. Autofocus imaging

    Hulsken, B. & Stallinga, S., 2019, Patent No. US10371929B2

    Research output: PatentOther research output

  20. Automated Lesion Detection by Regressing Intensity-Based Distance with a Neural Network

    van Wijnen, K. M. H., Dubost, F., Yilmaz, P., Ikram, M. A., Niessen, W., Adams, H., Vernooij, M. W. & de Bruijne, M., 2019, Medical Image Computing and Computer Assisted Intervention – MICCAI 2019 . Shen, D. (ed.). Springer, p. 234-242 (Lecture Notes in Computer Science; vol. 11767).

    Research output: Chapter in Book/Conference proceedings/Edited volumeChapterScientificpeer-review

  21. Automated Quantification of Enlarged Perivascular Spaces in Clinical Brain MRI across Sites

    Dubost, F., Dünnwald, M., Huff, D., Scheurmann, V., Schreiber, F., Vernooij, M. W., Niessen, W., Skalej, M., Schreiber, S. & More Authors, 2019, Proceedings of 2nd International Workshop on Context-Aware Surgical Theaters,OR 2.0 Context-Aware Operating Theaters and Machine Learning in Clinical Neuroimaging, MLCN 2019. Zhou, L., Sarikaya, D., Kia, S. M., Speidel, S., Malpani, A., Hashimoto, D., Habes, M., Löfstedt, T., Ritter, K. & Wang, H. (eds.). Springer, p. 103-111 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11796 LNCS).

    Research output: Chapter in Book/Conference proceedings/Edited volumeConference contributionScientificpeer-review

  22. Automatic detection of the region of interest in corneal endothelium images using dense convolutional neural networks

    Vigueras-Guillén, J. P., Lemij, H. G., Van Rooij, J., Vermeer, K. A. & Van Vliet, L. J., 2019, Proceeedings of SPIE : Medical Imaging 2019 : Image Processing. Angelini, E. D., Angelini, E. D., Angelini, E. D. & Landman, B. A. (eds.). SPIE, Vol. 10949. 12 p. 1094931. (MEDICAL IMAGING 2019: IMAGE PROCESSING).

    Research output: Chapter in Book/Conference proceedings/Edited volumeConference contributionScientificpeer-review

  23. Clinical value of cerebrospinal fluid neurofilament light chain in semantic dementia

    Meeter, L. H. H., Steketee, R. M. E., Salkovic, D., Vos, M. E., Grossman, M., McMillan, C. T., Niessen, W. J., Papma, J. M., De Jong, F. J. & More Authors, 2019, In : Journal of Neurology, Neurosurgery and Psychiatry. 90, 9, p. 997-1004 8 p.

    Research output: Contribution to journalArticleScientificpeer-review

  24. Cognitive functioning in patients with disorders along the heart-brain axis: the role of cerebral blood flow

    Leeuwis, A. E., Hooghiemstra, A. M., Bron, E. E., Kuipers, S., Oudeman, E. A., Kalay, T., Brunner-La-Rocco, H-P. H. P., Kappelle, L. J., Niessen, W. & More Authors, 2019, p. 755.

    Research output: Contribution to conferenceAbstractScientific

  25. Comparison between dynamic gadoxetate-enhanced MRI and 99m Tc-mebrofenin hepatobiliary scintigraphy with SPECT for quantitative assessment of liver function

    Rassam, F., Zhang, T., Cieslak, K. P., Lavini, C., Stoker, J., Bennink, R. J., van Gulik, T. M., van Vliet, L. J., Runge, J. H. & Vos, F. M., 2019, In : European Radiology. 29, 9, p. 5063-5072

    Research output: Contribution to journalArticleScientificpeer-review

  26. Comparison of MRI activity scoring systems and features for the terminal ileum in patients with Crohn disease

    Puylaert, C. A. J., Nolthenius, C. J. T., Tielbeek, J. A. W., Makanyanga, J. C., Rodriguez-Justo, M., Brosens, L. A. A., Nio, C. Y., Pendsé, D. A. & Vos, F. M., 2019, In : American Journal of Roentgenology. 212, 2, p. W25-W31

    Research output: Contribution to journalArticleScientificpeer-review

  27. Computer-Aided Assessment of Longitudinal Fundus Photos for Screening Diabetic Retinopathy

    Adal, K., 2019, 111 p.

    Research output: ThesisDissertation (TU Delft)Scientific

  28. Confocal Multi-line Scanning Microscope for Efficient 3D Fluorescence Imaging

    van der Graaff, L. & Stallinga, S., 2019, Proceedings Applied Industrial Optics : Spectroscopy, Imaging and Metrology 2019. OSA Publishing, 2 p.

    Research output: Chapter in Book/Conference proceedings/Edited volumeConference contributionScientificpeer-review

  29. Convolutional neural network-based regression for biomarker estimation in corneal endothelium microscopy images

    Vigueras Guillén, J. P., van Rooij, J. G. J., Lemij, H. G., Vermeer, K. & van Vliet, L., 2019, 2019 41st Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC). Penzel, T. (ed.). Piscataway, NJ, USA: IEEE, p. 876-881

    Research output: Chapter in Book/Conference proceedings/Edited volumeConference contributionScientificpeer-review

  30. Detection of mild cognitive impairment in a community-dwelling population using quantitative, multiparametric MRI-based classification

    Bouts, M. J. R. J., van der Grond, J., Vernooij, M. W., Koini, M., Schouten, T. M., de Vos, F., Feis, R. A., Lechner, A., Niessen, W. J. & More Authors, 2019, In : Human Brain Mapping. 40, 9, p. 2711-2722 12 p.

    Research output: Contribution to journalArticleScientificpeer-review

  31. Disease progression timeline estimation for Alzheimer's disease using discriminative event based modeling

    Venkatraghavan, V., Bron, E. E., Niessen, W. J. & Klein, S., 2019, In : NeuroImage. 186, p. 518-532

    Research output: Contribution to journalArticleScientificpeer-review

  32. Enlarged perivascular spaces in brain MRI: Automated quantification in four regions

    Dubost, F., Yilmaz, P., Adams, H., Bortsova, G., Ikram, M. A., Niessen, W., Vernooij, M. & de Bruijne, M., 2019, In : NeuroImage. 185, p. 534-544

    Research output: Contribution to journalArticleScientificpeer-review

  33. Event-Based Modeling with High-Dimensional Imaging Biomarkers for Estimating Spatial Progression of Dementia

    Venkatraghavan, V., Dubost, F., Bron, E. E., Niessen, W. J., de Bruijne, M. & Klein, S., 2019, Information Processing in Medical Imaging - 26th International Conference, IPMI 2019, Proceedings. Chung, A. C. S., Gee, J. C., Yushkevich, P. A. & Bao, S. (eds.). Springer, Vol. 11492. p. 169-180 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11492 LNCS).

    Research output: Chapter in Book/Conference proceedings/Edited volumeConference contributionScientificpeer-review

  34. Full exploitation of high dimensionality in brain imaging: The JPND working group statement and findings

    Adams, H. H. H., Roshchupkin, G. V., DeCarli, C., Franke, B., Grabe, H. J., Habes, M., Jahanshad, N., Medland, S. E., Niessen, W. & More Authors, 2019, In : Alzheimer's and Dementia: Diagnosis, Assessment and Disease Monitoring. 11, p. 286-290 5 p.

    Research output: Contribution to journalArticleScientificpeer-review

  35. Fully convolutional architecture vs sliding-window CNN for corneal endothelium cell segmentation

    Vigueras Guillén, J. P., Sari, B., Goes, S., Lemij, H. G., van Rooij, J., Vermeer, K. & van Vliet, L., 2019, In : BMC Biomedical Engineering. 1, 4

    Research output: Contribution to journalArticleScientificpeer-review

  36. Genetic Determinants of Cortical Structure (Thickness, Surface Area and Volumes) among Disease Free Adults in the CHARGE Consortium

    Niessen, W., 2019, (Accepted/In press) In : bioRxiv.

    Research output: Contribution to journalArticleScientific

  37. Genetic architecture of subcortical brain structures in 38,851 individuals

    Satizabal, C. L., Adams, H. H. H., Arfan Ikram, M. & Niessen, W., 2019, In : Nature Genetics. 51, 11, p. 1624-1636

    Research output: Contribution to journalArticleScientificpeer-review

  38. Genetic variation underlying cognition and its relation with neurological outcomes and brain imaging

    Knol, M. J., Heshmatollah, A., Cremers, L. G. M., Ikram, M. K., Uitterlinden, A. G., van Duijn, C. M., Niessen, W. J., Vernooij, M. W., Ikram, M. A. & Adams, H. H. H., 2019, In : Aging. 11, 5, p. 1440-1456

    Research output: Contribution to journalArticleScientificpeer-review

  39. Groupwise multichannel image registration

    Guyader, J. M., Huizinga, W., Fortunati, V., Poot, D. H. J., Veenland, J. F., Paulides, M. M., Niessen, W. J. & Klein, S., 2019, In : IEEE Journal of Biomedical and Health Informatics. 23, 3, p. 1171-1180 8373696.

    Research output: Contribution to journalArticleScientificpeer-review

  40. High-Dimensional Mapping of Cognition to the Brain Using Voxel-Based Morphometry and Subcortical Shape Analysis

    Zonneveld, H. I., Roshchupkin, G. V., Adams, H. H. H., Gutman, B. A., Van Der Lugt, A., Niessen, W., Vernooij, M. W. & Ikram, M. A., 2019, In : Journal of Alzheimer's Disease. 71, 1, p. 141-152

    Research output: Contribution to journalArticleScientificpeer-review

  41. Hydranet: Data augmentation for regression neural networks

    Dubost, F., Bortsova, G., Adams, H., Ikram, M. A., Niessen, W., Vernooij, M. & de Bruijne, M., 2019, Medical Image Computing and Computer Assisted Intervention – MICCAI 2019 - 22nd International Conference, Proceedings. Shen, D., Yap, P-T., Liu, T., Peters, T. M., Khan, A., Staib, L. H., Essert, C. & Zhou, S. (eds.). Springer, p. 438-446 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11767 LNCS).

    Research output: Chapter in Book/Conference proceedings/Edited volumeConference contributionScientificpeer-review

  42. Image analysis methods for dynamic hepatocyte-specific contrast enhanced MRI

    Zhang, T., 2019, 125 p.

    Research output: ThesisDissertation (TU Delft)Scientific

  43. Implementation of a quantum private query using single-photon transistors

    Nagtegaal, M. A. & Blaauboer, M., 2019, In : Journal of Physics B: Atomic, Molecular and Optical Physics. 52, 4, 6 p., 045501.

    Research output: Contribution to journalArticleScientificpeer-review

  44. Independent Multiple Factor Association Analysis for Multiblock Data in Imaging Genetics

    Vilor-Tejedor, N., Ikram, M. A., Roshchupkin, G. V., Cáceres, A., Alemany, S., Vernooij, M. W., Niessen, W. J., van Duijn, C. M., Adams, H. H. & More Authors, 2019, In : NeuroInformatics. 17, 4, p. 583-592 10 p.

    Research output: Contribution to journalArticleScientificpeer-review

  45. Integrated photonics interferometric interrogator for a ring-resonator ultrasound sensor

    Ouyang, B., Haverdings, M., Horsten, R., Kruidhof, M., Kat, P. & Caro, J., 2019, In : Optics Express. 27, 16, p. 23408-23421

    Research output: Contribution to journalArticleScientificpeer-review

  46. Label-free volumetric quantitative imaging of human osteosarcoma cells by hyperspectral coherent anti-Stokes Raman scattering

    Karuna, A., Masia, F., Wiltshire, M., Errington, R., Borri, P. & Langbein, W., 2019, Proceedings of SPIE: Multiphoton Microscopy in the Biomedical Sciences XIX. Periasamy, A., So, P. T. C. & Konig, K. (eds.). SPIE, Vol. 10882. 11 p. 108821P. (MULTIPHOTON MICROSCOPY IN THE BIOMEDICAL SCIENCES XIX).

    Research output: Chapter in Book/Conference proceedings/Edited volumeConference contributionScientificpeer-review

  47. Large scale high sensitivity optical diffraction tomography of zebrafish

    van Rooij, J. & Kalkman, J., 2019, Proceedings of SPIE: Advances in Microscopic Imaging II. Beaurepaire, E. & Pavone, F. S. (eds.). SPIE, Vol. 11076. 4 p. 110760U

    Research output: Chapter in Book/Conference proceedings/Edited volumeConference contributionScientificpeer-review

  48. Large-scale high-sensitivity optical diffraction tomography of Zebrafish

    Van Rooij, J. & Kalkman, J., 2019, In : Biomedical Optics Express. 10, 4, p. 1782-1793 #357859.

    Research output: Contribution to journalArticleScientificpeer-review

  49. Method and apparatus for optical coherence projection tomography

    Kalkman, J. & van der Horst, J., 2019, IPC No. A61B, Priority date 22 Feb 2018, Priority No. NL 2020483

    Research output: PatentOther research output

  50. Multi-line fluorescence scanning microscope for multi-focal imaging with unlimited field of view

    van der Graaff, L., van Leenders, G. J. L. H., Boyaval, F. & Stallinga, S., 2019, In : Biomedical Optics Express. 10, 12, p. 6313-6339

    Research output: Contribution to journalArticleScientificpeer-review

  51. Multiple-correlation similarity for block-matching based fast CT to ultrasound registration in liver interventions

    Banerjee, J., Sun, Y., Klink, C., Gahrmann, R., Niessen, W. J., Moelker, A. & van Walsum, T., 2019, In : Medical Image Analysis. 53, p. 132-141

    Research output: Contribution to journalArticleScientificpeer-review

  52. Mutation stratification of desmoid-type fibromatosis using a radiogenomics approach

    Timbergen, M., Starmans, M. P. A., Vos, M., Padmos, G. A., Grünhagen, D. J., van Leenders, G. J. L. H., Verhoef, C., Niessen, W., Sleijfer, S. & More Authors, 2019, In : European Journal of Surgical Oncology. 44, 2, p. e16

    Research output: Contribution to journalMeeting AbstractScientific

  53. Normative brain volumetry derived from different reference populations: impact on single-subject diagnostic assessment in dementia

    Vinke, E. J., Huizinga, W., Bergtholdt, M., Adams, H. H., Steketee, R. M. E., Papma, J. M., De Jong, F. J., Niessen, W. J., Ikram, M. A. & More Authors, 2019, In : Neurobiology of Aging. 84, p. 9-16

    Research output: Contribution to journalArticleScientificpeer-review

  54. OC-0567 Reconstructing the 3-D proton dose distribution from the modelled iono-acoustic wave field

    Lens, E., de Blécourt, A., Schaart, D., Vos, F. & van Dongen, K., 2019, In : Radiotherapy & Oncology. 133, suppl.1

    Research output: Contribution to journalMeeting AbstractScientific

  55. On-chip silicon Mach–Zehnder interferometer sensor for ultrasound detection

    Ouyang, B., Li, Y., Kruidhof, M., Horsten, R., van Dongen, K. W. A. & Caro, J., 2019, In : Optics Letters. 44, 8, p. 1928-1931

    Research output: Contribution to journalArticleScientificpeer-review

  56. One Nanometer Precision by Bayesian Grouping of Localizations

    Fazel, M., Rieger, B., Jungmann, R. & Lidke, K. A., 2019, In : Biophysical Journal. 116, 3, p. 291A-291A

    Research output: Contribution to journalMeeting AbstractScientific

  57. Optimized fast GPU implementation of robust artificial-neural-networks for k-space interpolation (RAKI) reconstruction

    Zhang, C., Hosseini, S. A. H., Weingärtner, S., Uǧurbil, K., Moeller, S. & Akçakaya, M., 2019, In : PLoS ONE. 14, 10, 14 p., e0223315.

    Research output: Contribution to journalArticleScientificpeer-review

  58. Orientation Prior and Consistent Model Selection Increase Sensitivity of Tract-Based Spatial Statistics in Crossing-Fiber Regions

    Arkesteijn, J., Poot, D., Ikram, M. A., Niessen, W., van Vliet, L., Vernooij, M. W. & Vos, F., 2019, In : IEEE Transactions on Medical Imaging. 39, 2, p. 308-319

    Research output: Contribution to journalArticleScientificpeer-review

  59. Parameter Selection for Regularized Electron Tomography Without a Reference Image

    Guo, Y. & Rieger, B., 2019, Image Analysis - 21st Scandinavian Conference, SCIA 2019, Proceedings. Felsberg, M., Forssén, P-E., Unger, J. & Sintorn, I-M. (eds.). Springer, p. 452-464 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11482 LNCS).

    Research output: Chapter in Book/Conference proceedings/Edited volumeConference contributionScientificpeer-review

  60. Patterns of functional connectivity in an aging population: The Rotterdam Study

    Zonneveld, H. I., Pruim, R. HR., Bos, D., Vrooman, H. A., Muetzel, R. L., Hofman, A., Rombouts, S. ARB., van der Lugt, A., Niessen, W. J. & More Authors, 2019, In : NeuroImage. 189, p. 432-444

    Research output: Contribution to journalArticleScientificpeer-review

  61. Predicting brain age as a biomarker for risk of dementia

    Wang, J., Knol, M. J., Tiulpin, A., Dubost, F., de Bruijne, M., Vernooij, M. W., Adams, H. H. H., Ikram, M. A., Niessen, W. & Roshchupkin, G. V., 2019, In : Alzheimer Disease and Associated Disorders. 15, 7, p. P537-P538

    Research output: Contribution to journalMeeting AbstractScientific

  62. Predicting the 1p/19q Codeletion Status of Presumed Low-Grade Glioma with an Externally Validated Machine Learning Algorithm

    van der Voort, S. R., Incekara, F., Wijnenga, M. M. J., Kapas, G., Gardeniers, M., Schouten, J. W., French, P. J., Niessen, W. J., Klein, S. & More Authors, 2019, In : Clinical cancer research : an official journal of the American Association for Cancer Research. 25, 24, p. 7455-7462

    Research output: Contribution to journalArticleScientificpeer-review

  63. Publisher Correction: Super-resolution fight club: assessment of 2D and 3D single-molecule localization microscopy software (Nature Methods, (2019), 16, 5, (387-395), 10.1038/s41592-019-0364-4)

    Sage, D., Pham, T. A., Babcock, H., Lukes, T., Pengo, T., Chao, J., Velmurugan, R., Herbert, A., Rieger, B. & More Authors, 2019, In : Nature Methods. 16, 6, p. 561-561 1 p.

    Research output: Contribution to journalComment/Letter to the editorScientific

  64. Pulse length, energy spread, and temporal evolution of electron pulses generated with an ultrafast beam blanker

    Weppelman, I. G. C., Moerland, R. J., Zhang, L., Kieft, E., Kruit, P. & Hoogenboom, J. P., 2019, In : Structural Dynamics. 6, 2, 12 p., 024102.

    Research output: Contribution to journalArticleScientificpeer-review

  65. Radiomics approach to distinguish between well differentiated liposarcomas and lipomas on MRI

    Vos, M., Starmans, M. P. A., Timbergen, M. J. M., van der Voort, S. R., Padmos, G. A., Kessels, W., Niessen, W. J., van Leenders, G. J. L. H. & Verhoef, C., 2019, In : British Journal of Surgery. 106, 13, p. 1800-1809

    Research output: Contribution to journalArticleScientificpeer-review

  66. Raman based identification of on-chip trapped single micro-organisms: A feasibility study

    Heldens, J., 2019, 118 p.

    Research output: ThesisDissertation (TU Delft)Scientific

  67. Silicon ring resonators with a free spectral range robust to fabrication variations

    Ouyang, B., Xing, Y., Bogaerts, W. & Caro, J., 2019, In : Optics Express. 27, 26, p. 38698-38707 10 p.

    Research output: Contribution to journalArticleScientificpeer-review

  68. Spatially regularized shape analysis of the hippocampus using P-spline based shape regression

    Achterberg, H. C., de Rooi, J., Vernooij, M. W., Arfan Ikram, M., Niessen, W., Eilers, P. & de Bruijne, M., 2019, In : IEEE Journal of Biomedical and Health Informatics. 11 p.

    Research output: Contribution to journalArticleScientificpeer-review

  69. Super-resolution fight club: Assessment of 2D and 3D single-molecule localization microscopy software

    Sage, D., Pham, T-A., Babcock, H., Lukes, T., Pengo, T., Velmurugan, R., Herbert, A., Agrawal, A., Rieger, B. & More Authors, 2019, In : Nature Methods (online). 16, 5, p. 387-395 9 p.

    Research output: Contribution to journalArticleScientific

  70. The value of hippocampal volume, shape, and texture for 11-year prediction of dementia: a population-based study

    Achterberg, H. C., Sørensen, L., Wolters, F. J., Niessen, W. J., Vernooij, M. W., Ikram, M. A., Nielsen, M. & de Bruijne, M., 2019, In : Neurobiology of Aging. 81, p. 58-66

    Research output: Contribution to journalArticleScientificpeer-review

  71. Two-Stage Beamforming for Phased Array Imaging using the Fast Hankel Transform

    Fool, F., de Wit, J., Vos, H. J., Bera, D., de Jong, N. & Verweij, M. D., 2019, In : IEEE Transactions on Ultrasonics, Ferroelectrics, and Frequency Control. 66, 2, p. 297-308 8570795.

    Research output: Contribution to journalArticleScientificpeer-review

  72. White matter by diffusion MRI following methylphenidate treatment: A randomized control trial in males with attention-deficit/hyperactivity disorder

    Bouziane, C., Filatova, O. G., Schrantee, A., Caan, M. W. A., Vos, F. M. & Reneman, L., 2019, In : Radiology. 293, 1, p. 186-192

    Research output: Contribution to journalArticleScientificpeer-review

  73. 2018
  74. Trajectories of imaging markers in brain aging: the Rotterdam Study

    Vinke, E. J., de Groot, M., Venkatraghavan, V., Klein, S., Niessen, W. J., Ikram, M. A. & Vernooij, M. W., 1 Nov 2018, In : Neurobiology of Aging. 71, p. 32-40 9 p.

    Research output: Contribution to journalArticleScientificpeer-review

  75. High-resolution deep-tissue quantitative optical tomography

    van der Horst, J., 14 Jun 2018, 105 p.

    Research output: ThesisDissertation (TU Delft)Scientific

  76. High precision wavefront control in point spread function engineering for single emitter localization

    Siemons, M., Hulleman, C. N., Thorsen, R. O., Smith, C. S. & Stallinga, S., 2 Apr 2018, In : Optics Express. 26, 7, p. 8397-8416 20 p.

    Research output: Contribution to journalArticleScientificpeer-review

  77. The Cryogenic Temperature Behavior of Bipolar, MOS, and DTMOS Transistors in Standard CMOS

    Homulle, H., Song, L., Charbon, E. & Sebastiano, F., 24 Jan 2018, In : IEEE Journal of the Electron Devices Society. 6, 1, p. 263-270 8 p.

    Research output: Contribution to journalArticleScientificpeer-review

  78. Ensemble landmarking of 3D facial surface scans

    De Jong, M. A., Hysi, P., Spector, T., Niessen, W., Koudstaal, M. J., Wolvius, E. B., Kayser, M. & Böhringer, S., 8 Jan 2018, In : Scientific Reports. 8, 1, 12.

    Research output: Contribution to journalArticleScientificpeer-review

  79. Averaged stochastic optimization for medical image registration based on variance reduction

    Sun, W., Poot, D. H. J., Yang, X., Niessen, W. J. & Klein, S., 1 Jan 2018, Biomedical Image Registration - 8th International Workshop, WBIR 2018, Proceedings. Klein, S., Sommer, S., Durrleman, S. & Staring, M. (eds.). Springer, Vol. 10883 LNCS. p. 69-79 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10883 LNCS).

    Research output: Chapter in Book/Conference proceedings/Edited volumeConference contributionScientificpeer-review

  80. Improved Accuracy and Robustness of a Corneal Endothelial Cell Segmentation Method Based on Merging Superpixels

    Vigueras-Guillén, J. P., Engel, A., Lemij, H. G., van Rooij, J., Vermeer, K. A. & van Vliet, L. J., 1 Jan 2018, Image Analysis and Recognition - 15th International Conference, ICIAR 2018, Proceedings. Springer, Vol. 10882 LNCS. p. 631-638 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10882 LNCS).

    Research output: Chapter in Book/Conference proceedings/Edited volumeConference contributionScientificpeer-review

  81. Optical coherence computed tomography for quantitative 3D imaging of adult zebrafish (Withdrawal Notice)

    Van Der Horst, J., Trull, A. & Kalkman, J., 1 Jan 2018, Three-Dimensional and Multidimensional Microscopy: Image Acquisition and Processing XXV. Brown, T. G., Cogswell, C. J. & Wilson, T. (eds.). SPIE, Vol. 10499. 104991D

    Research output: Chapter in Book/Conference proceedings/Edited volumeConference contributionScientificpeer-review

  82. White-matter microstructure and hearing acuity in older adults: a population-based cross-sectional DTI study

    Rigters, S. C., Cremers, L. G. M., Ikram, M. A., van der Schroeff, M. P., De Groot, M., Roshchupkin, G. V., Niessen, W. J. N., Baatenburg de Jong, R. J., Goedegebure, A. & Vernooij, M. W., 1 Jan 2018, In : Neurobiology of Aging: age-related phenomena, neurodegeneration and neuropathology. 61, p. 124-131 8 p.

    Research output: Contribution to journalArticleScientificpeer-review

  83. A hybrid optimization strategy for registering images with large local deformations and intensity variations

    Li, Z., van Vliet, L. J., Stoker, J. & Vos, F. M., 2018, In : International Journal of Computer Assisted Radiology and Surgery. p. 343-351

    Research output: Contribution to journalArticleScientificpeer-review

  84. A hybrid segmentation method for partitioning the liver based on 4D DCE-MR images

    Zhang, T., Wu, Z., Runge, J. H., Lavini, C., Stoker, J., Van Gulik, T., Cieslak, K. P., Van Vliet, L. J. & Vos, F. M., 2018, Medical Imaging 2018: Image Processing. SPIE, Vol. 10574. 1057434

    Research output: Chapter in Book/Conference proceedings/Edited volumeConference contributionScientificpeer-review

  85. A spatio-temporal reference model of the aging brain

    huizinga, W., Poot, D., Vernooij, M. W., Roshchupkin, G. V., bron, E. E., Ikram, M. A., Rueckert, D., Niessen, W. & Klein, S., 2018, In : NeuroImage. 169, p. 11-22

    Research output: Contribution to journalArticleScientificpeer-review

  86. Accurate estimation of the attenuation coefficient from axial point spread function corrected OCT scans of a single layer phantom

    Ghafaryasl, B., Vermeer, K. A., Kalkman, J., Callewaert, T., De Boer, J. F. & Van Vliet, L. J., 2018, Proceedings of SPIE: Optical Coherence Tomography and Coherence Domain Optical Methods in Biomedicine XXII. Izatt, J. A., Fujimoto, J. G. & Tuchin, V. V. (eds.). Bellingham, WA, USA: SPIE, Vol. 10483. 6 p. 104832B

    Research output: Chapter in Book/Conference proceedings/Edited volumeConference contributionScientificpeer-review

  87. Added value of multiphase CTA imaging for thrombus perviousness assessment

    Santos, E. M. M., D’Esterre, C. D., Treurniet, K. M., Niessen, W. J., Abou Najm, M., Goyal, M., Demchuk, A. M., Majoie, C. B. L. M., Menon, B. K. & Marquering, H. A., 2018, In : Neuroradiology: a journal devoted to neuroimaging and interventional neuroradiology. 60, 1, p. 71-79

    Research output: Contribution to journalArticleScientificpeer-review

  88. Aortic stiffness and brain integrity in elderly patients with cognitive and functional complaints

    Tap, L., van Opbroek, A., Niessen, W. J., Smits, M. & Mattace-Raso, F. U. S., 2018, In : CLINICAL INTERVENTIONS IN AGING. 13, p. 2161-2167

    Research output: Contribution to journalArticleScientificpeer-review

  89. Application of Sophisticated Models to Conventional Diffusion-Weighted MRI Data

    Arkesteijn, J., 2018, 91 p.

    Research output: ThesisDissertation (TU Delft)Scientific

  90. Automatic correction of nonlinear damping effects in HAADF–STEM tomography for nanomaterials of discrete compositions

    Zhong, Z., Aveyard, R., Rieger, B., Bals, S., Palenstijn, W. J. & Batenburg, K. J., 2018, In : Ultramicroscopy. 184, p. 57-65 9 p.

    Research output: Contribution to journalArticleScientificpeer-review

  91. Automatic normative quantification of brain tissue volume to support the diagnosis of dementia: A clinical evaluation of diagnostic accuracy

    Vernooij, M. W., Jasperse, B., Steketee, R., Koek, M., Vrooman, H., Ikram, M. A., Papma, J., van der Lugt, A., Smits, M. & Niessen, W. J., 2018, In : NeuroImage: Clinical. 20, p. 374-379 6 p.

    Research output: Contribution to journalArticleScientificpeer-review

  92. Blood perfusion of patellar bone measured by dynamic contrast-enhanced MRI in patients with patellofemoral pain: A case–control study

    van der Heijden, R. A., Poot, D. H. J., Ekinci, M., Kotek, G., van Veldhoven, P. L. J., Klein, S., Verhaar, J. A. N., Krestin, G. P., Bierma-Zeinstra, S. M. A., van Middelkoop, M. & Oei, E. H. G., 2018, In : Journal of Magnetic Resonance Imaging. 48, 5, p. 1344-1350

    Research output: Contribution to journalArticleScientificpeer-review

  93. Brain Volumes and Longitudinal Cognitive Change: A Population-based Study

    Vibha, D., Tiemeier, H., Mirza, S. S., Adams, H. H., Niessen, W. J., Hofman, A., Prasad, K., van der Lugt, A., Vernooij, M. W. & Ikram, M. A., 2018, In : Alzheimer Disease and Associated Disorders. 32, 1, p. 43-49

    Research output: Contribution to journalArticleScientificpeer-review

  94. Cerebellar growth impairment characterizes school-aged children born preterm without perinatal brain lesions

    Pieterman, K., White, T. J., Van Den Bosch, G. E., Niessen, W. J., Reiss, I. K. M., Tibboel, D., Hoebeek, F. E. & Dudink, J., 2018, In : American Journal of Neuroradiology. 39, 5, p. 956-962 7 p.

    Research output: Contribution to journalArticleScientificpeer-review

  95. Characterization and Compact Modeling of Nanometer CMOS Transistors at Deep-Cryogenic Temperatures

    Incandela, R. M., Song, L., Homulle, H., Charbon, E., Vladimirescu, A. & Sebastiano, F., 2018, In : IEEE Journal of the Electron Devices Society. 6, 11 p.

    Research output: Contribution to journalArticleScientificpeer-review

  96. Classification of malignant and benign liver tumors using a radiomics approach

    Starmans, M. P. A., Miclea, R. L., Van Der Voort, S. R., Niessen, W. J., Thomeer, M. G. & Klein, S., 2018, Medical Imaging 2018: Image Processing. SPIE, Vol. 10574. 105741D

    Research output: Chapter in Book/Conference proceedings/Edited volumeConference contributionScientificpeer-review

  97. Comparison of contrast-enhanced and diffusion-weighted MRI in assessment of the terminal ileum in Crohn’s disease patients

    Puylaert, C. A. J., Tielbeek, J. A. W., Schüffler, P. J., Nio, C. Y., Horsthuis, K., Mearadji, B., Ponsioen, C. Y., Vos, F. M. & Stoker, J., 2018, In : Abdominal Radiology. 8 p.

    Research output: Contribution to journalArticleScientificpeer-review

  98. Comparison of image reconstruction techniques for optical projection tomography

    Trull, A. K., van der Horst, J., Van Vliet, L. J. & Kalkman, J., 2018, In : Applied Optics. 57, 8, p. 1874-1882 9 p.

    Research output: Contribution to journalArticleScientificpeer-review

  99. Comparison of multi-tensor diffusion models' performance for white matter integrity estimation in chronic stroke

    Filatova, L., van Vliet, L. J., Schouten, A. C., Kwakkel, G., van der Helm, F. C. T., Vos, F. M. & More Authors, 2018, In : Frontiers in Neuroscience. 12, 12 p., 247.

    Research output: Contribution to journalArticleScientificpeer-review

  100. Concept and design of a beam blanker with integrated photoconductive switch for ultrafast electron microscopy

    Weppelman, I. G. C., Moerland, R. J., Hoogenboom, J. P. & Kruit, P., 2018, In : Ultramicroscopy. 184, p. 8-17 10 p.

    Research output: Contribution to journalArticleScientificpeer-review

  101. Contrast-enhancement influences skeletal muscle density, but not skeletal muscle mass, measurements on computed tomography

    van Vugt, J. L. A., Coebergh van den Braak, R. R. J., Schippers, H. J. W., Veen, K. M., Levolger, S., de Bruin, R. W. F., Koek, M., Niessen, W. J., IJzermans, J. N. M. & Willemsen, F. E. J. A., 2018, In : Clinical Nutrition. 37, 5, p. 1707-1714

    Research output: Contribution to journalArticleScientificpeer-review

  102. Corneal Endothelial Cell Segmentation by Classifier-driven Merging of Oversegmented Images

    Vigueras-Guillen, J. P., Andrinopoulou, E. R., Engel, A., Lemij, H. G., van Rooij, J., Vermeer, K. A. & van Vliet, L. J., 2018, In : IEEE Transactions on Medical Imaging. 37, 10, p. 2278-2289

    Research output: Contribution to journalArticleScientificpeer-review

  103. Differential patterns of age-related cortical and subcortical functional connectivity in 6-to-10 year old children: A connectome-wide association study

    Langen, C. D., Muetzel, R., Blanken, L., van der Lugt, A., Tiemeier, H., Verhulst, F., Niessen, W. J. & White, T., 2018, In : Brain and Behavior. 8, 8, 15 p., e01031.

    Research output: Contribution to journalArticleScientificpeer-review

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