1. 2020
  2. Thioalkalibacter

    Sorokin, D. Y., Merkel, A. & Muyzer, G., Mar 2020, Thioalkalibacter. Oren, A. (ed.). John Wiley & Sons, p. 1-6 (Bergey’s Manual of Systematics of Archaea and Bacteria, Online © 2015 Bergey’s Manual Trust).

    Research output: Chapter in Book/Conference proceedings/Edited volumeChapterScientific

  3. Thiohalobacter

    Sorokin, D. Y., Merkel, A. & Muyzer, G., Mar 2020, Bergey’s manual of systematics of archaea and bacteria. Oren, A. (ed.). John Wiley & Sons, p. 1-5 (Bergey’s Manual of Systematics of Archaea and Bacteria, on line edition).

    Research output: Chapter in Book/Conference proceedings/Edited volumeChapterScientific

  4. Complete genome sequence of “candidatus syntrophocurvum alkaliphilum” strain B(2M), obtained from the metagenome of a salt-tolerant alkaliphilic anaerobic syntrophic butyrate-degrading consortium

    Mardanov, A. V., Sorokin, D. Y., Beletsky, A. V. & Ravin, N. V., 2020, In : Microbiology Resource Announcements. 9, 6, 3 p., e01511-19.

    Research output: Contribution to journalArticleScientificpeer-review

  5. Effect of dimethyl disulfide on the sulfur formation and microbial community composition during the biological H2S removal from sour gas streams

    Kiragosyan, K., Picard, M., Sorokin, D. Y., Dijkstra, J., Klok, J. B. M., Roman, P. & Janssen, A. J. H., 2020, In : Journal of Hazardous Materials. 386, 11 p., 121916.

    Research output: Contribution to journalArticleScientificpeer-review

  6. Tackling the chemical diversity of microbial nonulosonic acids-a universal large-scale survey approach

    Kleikamp, H. B. C., Lin, Y. M., McMillan, D. G. G., Geelhoed, J. S., Naus-Wiezer, S. N. H., Van Baarlen, P., Saha, C., Louwen, R., Sorokin, D. Y., Van Loosdrecht, M. C. M. & Pabst, M., 2020, In : Chemical Science. 11, 11, p. 3074-3080

    Research output: Contribution to journalReview articleScientificpeer-review

  7. Thiohalorhabdus

    Sorokin, D. Y., Merkel, A. & Muyzer, G., 2020, Bergey’s manual of systematics of archaea and bacteria. Oren, A. & Whitman, W. B. (eds.). on line edition 2015 ed. John Wiley & Sons, p. 1-6 (Bergey’s Manual of Systematics of Archaea and Bacteria, Online © 2015 Bergey’s Manual Trust.).

    Research output: Chapter in Book/Conference proceedings/Edited volumeChapterScientific

  8. Trinuclear copper biocatalytic center forms an active site of thiocyanate dehydrogenase

    Tikhonova, T. V., Sorokin, D. Y., Hagen, W. R., Khrenova, M. G., Muyzer, G., Rakitina, T. V., Shabalin, I. G., Trofimov, A. A., Tsallagov, S. I. & Popov, V. O., 2020, In : Proceedings of the National Academy of Sciences of the United States of America. 117, 10, p. 5280-5290

    Research output: Contribution to journalArticleScientificpeer-review

  9. 2019
  10. Новые тиоцианатдегидрогеназы из сероокисляющих бактерий ThiohalobacterthiocyanaticusHRH1T и Guyparkeriasp.SCN-R1

    Shipkov N.S., Dergousova N.I., Rakitina T.V., Varfolomeeva L.A., Kulikova O.G., Tikhonova T.V., Popov V.O. & Sorokin, D. Y., Oct 2019, p. 259. 1 p.

    Research output: Contribution to conferenceAbstractScientific

  11. Novel genomic determinants of respiratory metabolism in extremophilic prokaryotes

    Gavrilov S., Toshchakov S., Slobodkin A., Elizarov I., Golyshina O., Golyshin P., Yakimov M., Kublanov I & Sorokin, D. Y., Jul 2019, p. 15.

    Research output: Contribution to conferenceAbstractScientific

  12. Role of CopC from Thioalkalivibrio paradoxus as a copper chaperone

    Kulikova O.G., Tikhonova T.V., Dergousova N.I., Osipov E.M., Popov V.O. & Sorokin, D. Y., Jun 2019, p. 117.

    Research output: Contribution to conferenceAbstractScientific

  13. Comparative genomics of Thiohalobacter thiocyanaticus HRh1T and guyparkeriasp. SCN-R1, halophilic chemolithoautotrophic sulfur-oxidizing gammaproteobacteria capable of using thiocyanate as energy source

    Tsallagov, S. I., Sorokin, D. Y., Tikhonova, T. V., Popov, V. O. & Muyzer, G., 1 Jan 2019, In : Frontiers in Microbiology. 10, MAY, 00898.

    Research output: Contribution to journalArticleScientificpeer-review

  14. Bioenergetics of haloalkaliphiles

    Muntyan, M. S., Muntyan M.S., Malinen A.M., Skulachev V.P., Sorokin, D. Y. & Skulachev, V. P., 2019, In : Studia Universitatis Babes-Bolyai. Biologia. 64, 1, p. 55-56

    Research output: Contribution to journalMeeting AbstractScientific

  15. Candidatus Methanohalarchaeum

    Sorokin, D. Y. & Merkel, A., 2019, Bergey’s Manual of Systematics of Archaea and Bacteria, Online © 2015 Bergey’s Manual Trust. Whitman, W. B. (ed.). John Wiley & Sons, 3 p.

    Research output: Chapter in Book/Conference proceedings/Edited volumeChapterScientific

  16. Corrigendum to “Natrachaeobius chitinivorans gen. nov., sp. nov., and Natrarchaeobius haloalkaliphilus sp. nov., alkaliphilic, chitin-utilizing haloarchaea from hypersaline alkaline lakes” (Systematic and Applied Microbiology (2019) 42(3) (309–318), (S0723202018304387), (10.1016/j.syapm.2019.01.001))

    Sorokin, D. Y., Elcheninov, A. G., Toshchakov, S. V., Bale, N. J., Damsté, J. S. S., Khijniak, T. V. & Kublanov, I. V., 2019, In : Systematic and Applied Microbiology. 42, 5, 126003.

    Research output: Contribution to journalComment/Letter to the editorScientific

  17. Corrigendum to “Natronobiforma cellulositropha gen. nov., sp. nov., a novel haloalkaliphilic member of the family Natrialbaceae (class Halobacteria) from hypersaline alkaline lakes” [Syst. Appl. Microbiol. 41 (2018) 355–362](S072320201830095X)(10.1016/j.syapm.2018.04.002)

    Sorokin, D. Y., Khijniak, T. V., Kostrikina, N. A., Elcheninov, A. G., Toshchakov, S. V., Bale, N. J., Sinninghe Damsté, J. S. & Kublanov, I. V., 2019, In : Systematic and Applied Microbiology. 42, 2, p. 261-262

    Research output: Contribution to journalComment/Letter to the editorScientific

  18. Desulfurispirillum

    Sorokin, D. Y., Merkel, A. & Haggblom, M. M., 2019, Bergey’s Manual of Systematics of Archaea and Bacteria, Online © 2015 Bergey’s Manual Trust.. Whitman, W. B. (ed.). 2019 ed. John Wiley & Sons, 5 p.

    Research output: Chapter in Book/Conference proceedings/Edited volumeChapterScientific

  19. Dethiobacter

    Sorokin, D. Y. & Merkel, A., 2019, Bergey’s Manual of Systematics of Archaea and Bacteria, Online © 2015 Bergey’s Manual Trust. Whitman, W. B. (ed.). John Wiley & Sons, 5 p.

    Research output: Chapter in Book/Conference proceedings/Edited volumeChapterScientific

  20. Diversity and distribution of sulfur oxidation-related genes in thioalkalivibrio, a genus of chemolithoautotrophic and haloalkaliphilic sulfur-oxidizing bacteria

    Berben, T., Overmars, L., Sorokin, D. Y. & Muyzer, G., 2019, In : Frontiers in Microbiology. 10, 15 p., 160.

    Research output: Contribution to journalArticleScientificpeer-review

  21. Dusulfurispira

    Sorokin, D. Y. & Merkel, A., 2019, Bergey’s Manual of Systematics of Archaea and Bacteria, Online © 2015 Bergey’s Manual Trust. Whitman, W. B. (ed.). 2019 ed. John Wiley & Sons, 4 p.

    Research output: Chapter in Book/Conference proceedings/Edited volumeChapterScientific

  22. Halococcoides cellulosivorans gen. nov., sp. nov., an extremely halophilic cellulose-utilizing haloarchaeon from hypersaline lakes

    Sorokin, D. Y., Khijniak, T. V., Elcheninov, A. G., Toshchakov, S. V., Kostrikina, N. A., Bale, N. J., Sinninghe Damsté, J. S. & Kublanov, I. V., 2019, In : International Journal of Systematic and Evolutionary Microbiology. 69, 5, p. 1327-1335 9 p., 003312.

    Research output: Contribution to journalArticleScientificpeer-review

  23. Increasing the Selectivity for Sulfur Formation in Biological Gas Desulfurization

    De Rink, R., Klok, J. B. M., Van Heeringen, G. J., Sorokin, D. Y., Ter Heijne, A., Zeijlmaker, R., Mos, Y. M., De Wilde, V., Keesman, K. J. & Buisman, C. J. N., 2019, In : Environmental Science and Technology. 53, 8, p. 4519-4527

    Research output: Contribution to journalArticleScientificpeer-review

  24. Metagenomes and metatranscriptomes shed new light on the microbial-mediated sulfur cycle in a Siberian soda lake

    Vavourakis, C. D., Mehrshad, M., Balkema, C., Van Hall, R., Andrei, A. Ş., Ghai, R., Sorokin, D. Y. & Muyzer, G., 2019, In : BMC Biology. 17, 1, 20 p., 69.

    Research output: Contribution to journalArticleScientificpeer-review

  25. Methanogens and Methanogenesis in Hypersaline Environments

    Sorokin, D. Y. & McGenety, T., 2019, Biogenesis of Hydrocarbons. Stams, A. J. M. & Sousa, D. Z. (eds.). Springer, p. 1-24 (Handbook of Hydrocarbon and Lipid Microbiology).

    Research output: Chapter in Book/Conference proceedings/Edited volumeChapterScientificpeer-review

  26. Methanonatronarchaeaceae

    Sorokin, D. Y. & Merkel, A., 2019, Bergey’s Manual of Systematics of Archaea and Bacteria, Online © 2015 Bergey’s Manual Trust. Whitman, W. B. (ed.). 2019 ed. John Wiley & Sons, 2 p.

    Research output: Chapter in Book/Conference proceedings/Edited volumeChapterScientific

  27. Methanonatronarchaeales

    Sorokin, D. Y. & Merkel, A., 2019, Bergey’s Manual of Systematics of Archaea and Bacteria, Online © 2015 Bergey’s Manual Trust. Whitman, W. B. (ed.). 2019 ed. John Wiley & Sons, 1 p.

    Research output: Chapter in Book/Conference proceedings/Edited volumeChapterScientific

  28. Methanonatronarchaeia

    Sorokin, D. Y. & Merkel, A., 2019, Bergey’s Manual of Systematics of Archaea and Bacteria, Online © 2015 Bergey’s Manual Trust. Whitman, W. B. (ed.). 2019 ed. John Wiley & Sons, 1 p.

    Research output: Chapter in Book/Conference proceedings/Edited volumeChapterScientific

  29. Methanonatronarchaeum

    Sorokin, D. Y. & Merkel, A., 2019, Bergey’s Manual of Systematics of Archaea and Bacteria, Online © 2015 Bergey’s Manual Trust. Whitman, W. B. (ed.). 2019 ed. John Wiley & Sons, 6 p.

    Research output: Chapter in Book/Conference proceedings/Edited volumeChapterScientific

  30. Microbial diversity in the deepsea anaerobic hypersaline environments with emphasis on the role of anaerobic haloarchaea in C and S cycles

    Yakimov M.M., La Cono V., La Cono, V. & Sorokin, D. Y., 2019, In : Studia Universitatis Babes-Bolyai. Biologia. 64, 1, p. 49

    Research output: Contribution to journalMeeting AbstractScientific

  31. Natrarchaeobius chitinivorans gen. nov., sp. nov., and Natrarchaeobius halalkaliphilus sp. nov., alkaliphilic, chitin-utilizing haloarchaea from hypersaline alkaline lakes

    Sorokin, D. Y., Elcheninov, A. G., Toshchakov, S. V., Bale, N. J., Sinninghe Damsté, J. S., Khijniak, T. V. & Kublanov, I. V., 2019, In : Systematic and Applied Microbiology. 42, 3, p. 309-318 10 p.

    Research output: Contribution to journalArticleScientificpeer-review

  32. Natronobiforma

    Sorokin, D. Y., Oren, A., Elcheninov, A. G. & Kublanov, I. V., 2019, Bergey's Manual of Systematics of Archaea and Bacteria. John Wiley & Sons, p. 1-7 (Bergey’s Manual of Systematics of Archaea and Bacteria, Online © 2015 Bergey’s Manual Trust. This article is © 2019 Bergey’s Manual Trust.).

    Research output: Chapter in Book/Conference proceedings/Edited volumeChapterScientific

  33. Natronolimnobius sulfurireducens sp. nov. and Halalkaliarchaeum desulfuricum gen. nov., sp. nov., the first sulfur-respiring alkaliphilic haloarchaea from hypersaline alkaline lakes

    Sorokin, D. Y., Yakimov, M., Messina, E., Merkel, A. Y., Bale, N. J. & Sinninghe Damsté, J. S., 2019, In : International Journal of Systematic and Evolutionary Microbiology. 69, 9, p. 2662-2673

    Research output: Contribution to journalArticleScientificpeer-review

  34. New insights into the polar lipid composition of extremely halo(alkali)philic euryarchaea from hypersaline lakes

    Bale, N. J., Sorokin, D. Y., Hopmans, E. C., Koenen, M., Irene Rijpstra, W. C., Villanueva, L., Wienk, H. & Sinninghe Damsté, J. S., 2019, In : Frontiers in Microbiology. 10, MAR, 24 p., 377.

    Research output: Contribution to journalArticleScientificpeer-review

  35. Preliminary characterization of two novel thiocyanate dehydrogenases from halophilic sulfur oxidizing Gammaproteobacteria Thiohalobacter thiocyanaticus HRh1T and Guyparkeria sp. SCN-R1

    Shipkov N.S., Dergousova N.I., Rakitina T.V., Tsallagov S.I., Tikhonova T.V., Popov V.O. & Sorokin, D. Y., 2019, p. 117.

    Research output: Contribution to conferenceAbstractScientific

  36. Reply to ‘Evolutionary placement of Methanonatronarchaeia’

    Sorokin, D. Y., Makarova, K. S., Abbas, B., Ferrer, M., Golyshin, P. N., Galinski, E. A., Ciorda, S., Mena, M. C., van Loosdrecht, M. C. M. & More Authors, 2019, In : Nature Microbiology. 4, 4, p. 560-561

    Research output: Contribution to journalLetterScientificpeer-review

  37. Sulfate-reducing bacteria that produce exopolymers thrive in the calcifying zone of a hypersaline cyanobacterial mat

    Spring, S., Sorokin, D. Y., Verbarg, S., Rohde, M., Woyke, T. & Kyrpides, N. C., 2019, In : Frontiers in Microbiology. 10, APR, 19 p., 862.

    Research output: Contribution to journalArticleScientificpeer-review

  38. The patterns of nitrogen fixation in haloalkaliphilic phototrophic communities of Kulunda Steppe soda lakes (Altai, Russia)

    Samylina, O. S., Namsaraev, Z. B., Slobodova, N. V., Zelenev, V. V., Borisenko, G. V. & Sorokin, D. Y., 2019, In : FEMS Microbiology Ecology. 95, 11, 13 p., fiz174.

    Research output: Contribution to journalArticleScientificpeer-review

  39. Transcriptomic analysis of two thioalkalivibriospecies under arsenite stress revealed a potential candidate gene for an alternative arsenite oxidation pathway

    Ahn, A. C., Cavalca, L., Colombo, M., Schuurmans, J. M., Sorokin, D. Y. & Muyzer, G., 2019, In : Frontiers in Microbiology. 10, JULY, 01514.

    Research output: Contribution to journalArticleScientificpeer-review

  40. Разнообразие светозависимых генераторов энергии у экстремально алкалифильных микроорганизмов

    Muntyan M.S., Chitrina L.V., Zaspa A.A., Skulachev V.P. & Sorokin, D. Y., 2019, In : Frontiers in Microbiology. 9, p. 84-85

    Research output: Contribution to journalMeeting AbstractScientific

  41. 2018
  42. Methanonatronarchaeum thermophilum gen. Nov., sp. nov. and ’Candidatus methanohalarchaeum thermophilum’, extremely halo(natrono)philic methyl-reducing methanogens from hypersaline lakes comprising a new euryarchaeal class Methanonatronarchaeia classis nov.

    Sorokin, D. Y., Merkel, A. Y., Abbas, B., Makarova, K. S., Rijpstra, W. I. C., Koenen, M., Sinninghe Damsté, J. S., Galinski, E. A., Koonin, E. V. & Van Loosdrecht, M. C. M., 1 Jul 2018, In : International Journal of Systematic and Evolutionary Microbiology. 68, 7, p. 2199-2208 10 p., 002810.

    Research output: Contribution to journalArticleScientificpeer-review

  43. Structure of the flavocytochrome C sulfide dehydrogenase associated with the copper-binding protein CopC from the haloalkaliphilic sulfuroxidizing bacterium thioalkalivibrio paradoxus ArH 1

    Osipov, E. M., Lilina, A. V., Tsallagov, S. I., Safonova, T. N., Sorokin, D. Y., Tikhonova, T. V. & Popova, V. O., 1 Jul 2018, In : Acta Crystallographica Section D: Structural Biology. 74, 7, p. 632-642

    Research output: Contribution to journalArticleScientificpeer-review

  44. Effect of salinity on diazotrophic activity and microbial composition of phototrophic communities from Bitter-1 soda lake (Kulunda Steppe, Russia)

    Namsaraev, Z., Samylina, O., Sukhacheva, M., Borisenko, G., Sorokin, D. Y. & Tourova, T., 16 Apr 2018, In : Extremophiles: life under extreme conditions. p. 1-13 13 p.

    Research output: Contribution to journalArticleScientificpeer-review

  45. A metagenomics roadmap to the uncultured genome diversity in hypersaline soda lake sediments

    Vavourakis, C. D., Andrei, A. S., Mehrshad, M., Ghai, R., Sorokin, D. Y. & Muyzer, G., 2018, In : Microbiome. 6, 1, 168.

    Research output: Contribution to journalArticleScientificpeer-review

  46. Halodesulfurarchaeum

    Sorokin, D. Y., Messina, E. & Yakimov, M., 2018, Bergey’s Manual of Systematics of Archaea and Bacteria, Online. Whitman, W. B. (ed.). John Wiley & Sons, p. 1-6

    Research output: Chapter in Book/Conference proceedings/Edited volumeChapterScientific

  47. Metabolism and occurrence of methanogenic and sulfate-reducing syntrophic acetate oxidizing communities in haloalkaline environments

    Timmers, P. H. A., Vavourakis, C. D., Kleerebezem, R., Sinninghe Damsté, J. S., Muyzer, G., Stams, A. J. M., Sorokin, D. Y. & Plugge, C. M., 2018, In : Frontiers in Microbiology. 9, DEC, 18 p., 3039.

    Research output: Contribution to journalArticleScientificpeer-review

  48. Methanosalsum

    Sorokin, D. Y. & Merkel, A., 2018, Bergey’s Manual of Systematics of Archaea and Bacteria, Online. Whitman, W. B. (ed.). John Wiley & Sons, p. 1-8

    Research output: Chapter in Book/Conference proceedings/Edited volumeChapterScientific

  49. Natronobiforma cellulositropha gen. nov., sp. nov., a novel haloalkaliphilic member of the family Natrialbaceae (class Halobacteria) from hypersaline alkaline lakes

    Sorokin, D. Y., Khijniak, T. V., Kostrikina, N. A., Elcheninov, A. G., Toshchakov, S. V., Bale, N. J., Damsté, J. S. S. & Kublanov, I. V., 2018, In : Systematic and Applied Microbiology. 8 p.

    Research output: Contribution to journalArticleScientificpeer-review

  50. Nitrolancea

    Sorokin, D. Y., Lucker, S. & Daims, H., 2018, Bergey’s Manual of Systematics of Archaea and Bacteria, Online. Whitman, W. B. (ed.). John Wiley & Sons, p. 1-6

    Research output: Chapter in Book/Conference proceedings/Edited volumeChapterScientific

  51. Novel route of thiocyanate utilization in microorganisms: Discovery of a novel copper enzyme - thiocyanate dehydrogenase: P47

    Tikhonova, TV., Sorokin, D. Y. & More Authors, 2018.

    Research output: Contribution to conferencePosterScientific

  52. Phenotypic and genomic properties of a novel deep-lineage haloalkaliphilic member of the phylum Balneolaeota from soda lakes possessing Na+-translocating proteorhodopsin

    Sorokin, D. Y., Muntyan, M. S., Toshchakov, S. V., Korzhenkov, A. & Kublanov, I. V., 2018, In : Frontiers in Microbiology. 9, 11 p., 2672.

    Research output: Contribution to journalArticleScientificpeer-review

  53. Proteomic analysis of methanonatronarchaeum thermophilum AMET1, a representative of a putative new class of euryarchaeota, “methanonatronarchaeia”

    Ferrer, M., Sorokin, D. Y., Wolf, Y. I., Ciordia, S., Mena, M. C., Bargiela, R., Koonin, E. V. & Makarova, K. S., 2018, In : Genes. 9, 2, 18 p., 28.

    Research output: Contribution to journalArticleScientificpeer-review

  54. Sulfur respiration in a Group of facultatively anaerobic natronoarchaea ubiquitous in hypersaline soda lakes

    Sorokin, D. Y., Messina, E., La Cono, V., Ferrer, M., Ciordia, S., Mena, M. C., Toshchakov, S. V., Golyshin, P. N. & Yakimov, M. M., 2018, In : Frontiers in Microbiology. 9, OCT, 2359.

    Research output: Contribution to journalArticleScientificpeer-review

  55. Vertical distribution in abundance and activity of sulfur-oxidizers in a Siberian hypersaline soda lake: P53

    Vavourakis, C., Sorokin, D. Y. & More Authors, 2018.

    Research output: Contribution to conferencePosterScientific

  56. 2017
  57. Analysis of the genes involved in thiocyanate oxidation during growth in continuous culture of the haloalkaliphilic sulfur-oxidizing bacterium Thioalkalivibrio thiocyanoxidans ARh 2T using transcriptomics

    Berben, T., Balkema, C., Sorokin, D. Y. & Muyzer, G., 1 Nov 2017, In : mSystems. 2, 6, 12 p., e00102.

    Research output: Contribution to journalArticleScientificpeer-review

  58. Natronotalea proteinilytica gen. nov., sp. nov. and Longimonas haloalkaliphila sp. nov., extremely haloalkaliphilic members of the phylum Rhodothermaeota from hypersaline alkaline lakes

    Sorokin, D. Y., Khijniak, T. V., Galinski, E. A. & Kublanov, I. V., 1 Oct 2017, In : International Journal of Systematic and Evolutionary Microbiology. 67, 10, p. 4161-4167 7 p., 002272.

    Research output: Contribution to journalArticleScientificpeer-review

  59. Draft genome sequence of Dethiobacter alkaliphilus strain AHT1T, a gram-positive sulfidogenic polyextremophile

    Melton, E. D., Sorokin, D. Y., Overmars, L., Lapidus, A. L., Pillay, M., Ivanova, N., del Rio, T. G., Kyrpides, N. C., Woyke, T. & Muyzer, G., 21 Sep 2017, In : Standards in Genomic Sciences. 12, 1, 57.

    Research output: Contribution to journalArticleScientificpeer-review

  60. Discovery of extremely halophilic, methyl-reducing euryarchaea provides insights into the evolutionary origin of methanogenesis

    Sorokin, DI. Y., Makarova, K. S., Abbas, B., Ferrer, M., Golyshin, P. N., Galinski, E. A., Ciordia, S., Mena, M. C., Merkel, A. Y., Wolf, Y. I., Van Loosdrecht, M. C. M. & Koonin, E. V., 30 May 2017, In : Nature Reviews. Microbiology. 2, 8, 35 p., 17081.

    Research output: Contribution to journalArticleScientificpeer-review

  61. Discovery of anaerobic lithoheterotrophic haloarchaea, ubiquitous in hypersaline habitats

    Sorokin, DI. Y., Messina, E., Smedile, F., Roman, P., Damsté, J. S. S., Ciordia, S., Mena, M. C., Ferrer, M., Golyshin, P. N., Kublanov, I. V., Samarov, N. I., Toshchakov, S. V., La Cono, V. & Yakimov, M. M., 1 May 2017, In : The ISME Journal: multidisciplinary journal of microbial ecology. 11, 5, p. 1245-1260 16 p.

    Research output: Contribution to journalArticleScientificpeer-review

  62. Genomic diversity within the haloalkaliphilic genus Thioalkalivibrio

    Ahn, A. C., Meier-Kolthoff, J. P., Overmars, L., Richter, M., Woyke, T., Sorokin, D. Y. & Muyzer, G., 1 Mar 2017, In : PLoS ONE. 12, 3, 23 p., e0173517.

    Research output: Contribution to journalArticleScientificpeer-review

  63. Comparative genome analysis of three thiocyanate oxidizing Thioalkalivibrio species isolated from soda lakes

    Berben, T., Overmars, L., Sorokin, D. Y. & Muyzer, G., 28 Feb 2017, In : Frontiers in Microbiology. 8, FEB, 14 p., 254.

    Research output: Contribution to journalArticleScientificpeer-review

  64. Desulfonatronospira sulfatiphila sp. Nov., and Desulfitispora elongata sp. nov., two novel haloalkaliphilic sulfidogenic bacteria from soda lakes

    Sorokin, D. Y. & Chernyh, N. A., 1 Feb 2017, In : International Journal of Systematic and Evolutionary Microbiology. 67, 2, p. 396-401 6 p., 001640.

    Research output: Contribution to journalArticleScientificpeer-review

  65. Metabolic Response of “Candidatus Accumulibacter Phosphatis” Clade II C to Changes in Influent P/C Ratio

    Welles, L., Abbas, B., Sorokin, D., Lopez Vazquez, C., Hooijmans, C. M., van Loosdrecht, M. & Brdanovic, D., 5 Jan 2017, In : Frontiers in Microbiology. 7, 16 p., 2121.

    Research output: Contribution to journalArticleScientificpeer-review

  66. Anaerobic haloalkaliphiles

    Sorokin, D. Y., 2017, Encyclopedia Life Science (eLS). John Wiley & Sons, p. 1-16

    Research output: Chapter in Book/Conference proceedings/Edited volumeChapterScientific

  67. Diversity of cultivated aerobic poly-hydrolytic bacteria in saline alkaline soils

    Sorokin, D. Y., Kolganova, T. V., Khijniak, T. V., Jones, B. E. & Kublanov, I. V., 2017, In : PeerJ. 2017, 9, 21 p., 3796.

    Research output: Contribution to journalArticleScientificpeer-review

  68. Genomic analysis of the evolution of phototrophy among haloalkaliphilic rhodobacterales

    Kopejtka, K., Tomasch, J., Zeng, Y., Tichý, M., Sorokin, D. Y. & Koblížek, M., 2017, In : Genome Biology and Evolution. 9, 7, p. 1950-1962 13 p.

    Research output: Contribution to journalArticleScientificpeer-review

  69. Natronospira proteinivora gen. nov., sp. nov, an extremely salttolerant, alkaliphilic gammaproteobacterium from hypersaline soda lakes

    Sorokin, D. Y., Kublanov, I. V. & Khijniak, T. V., 2017, In : International Journal of Systematic and Evolutionary Microbiology. 67, 8, p. 2604-2608 5 p., 001983.

    Research output: Contribution to journalArticleScientificpeer-review

  70. Syntrophic acetate oxidation at haloalkaline conditions

    Timmers, P., Vavourakis, C., Muyzer, G. & Sorokin, D. Y., 2017.

    Research output: Contribution to conferencePosterProfessional

  71. 2016
  72. Selection and Application of Sulfide Oxidizing Microorganisms Able to Withstand Thiols in Gas Biodesulfurization Systems

    Roman, P., Klok, J. B. M., Sousa, J. A. B., Broman, E., Dopson, M., Van Zessen, E., Bijmans, M. F. M., Sorokin, D. & Janssen, A. J. H., 6 Dec 2016, In : Environmental Science & Technology (Washington). 50, 23, p. 12808-12815 8 p.

    Research output: Contribution to journalArticleScientificpeer-review

  73. Sulfur and Oxygen Isotope Fractionation During Bacterial Sulfur Disproportionation Under Anaerobic Haloalkaline Conditions

    Poser, A., Vogt, C., Knöller, K., Sorokin, D., Finster, K. W. & Richnow, H. H., 25 Nov 2016, In : Geomicrobiology Journal: an international journal of geomicrobiology and microbial biogeochemistry. 33, 10, p. 934-941 8 p.

    Research output: Contribution to journalArticleScientificpeer-review

  74. Inhibition of a biological sulfide oxidation under haloalkaline conditions by thiols and diorgano polysulfanes

    Roman, P., Lipińska, J., Bijmans, M. F. M., Sorokin, D., Keesman, K. J. & Janssen, A. J. H., 15 Sep 2016, In : Water Research. 101, p. 448-456 9 p.

    Research output: Contribution to journalArticleScientificpeer-review

  75. Syntrophic associations from hypersaline soda lakes converting organic acids and alcohols to methane at extremely haloalkaline conditions

    Sorokin, D., Abbas, B., Geleijnse, M., Kolganova, T. V., Kleerebezem, R. & van Loosdrecht, M. C. M., 13 Sep 2016, In : Environmental Microbiology. 18, p. 3189-3202 14 p.

    Research output: Contribution to journalArticleScientificpeer-review

  76. Complete genome sequence of Desulfurivibrio alkaliphilus strain AHT2T, a haloalkaliphilic sulfidogen from Egyptian hypersaline alkaline lakes

    Melton, E. D., Sorokin, D., Overmars, L., Chertkov, O., Clum, A., Pillay, M., Ivanova, N., Shapiro, N., Kyrpides, N. C., Woyke, T., Lapidus, A. L. & Muyzer, G., 8 Sep 2016, In : Standards in Genomic Sciences. 11, 67.

    Research output: Contribution to journalArticleScientificpeer-review

  77. Halanaeroarchaeum sulfurireducens gen. nov., sp. nov., the first obligately anaerobic sulfur-respiring haloarchaeon, isolated from a hypersaline lake

    Sorokin, D., Kublanov, I. V., Yakimov, M. M., Rijpstra, W. I. C. & Sinninghe Damsté, J. S., 1 Jun 2016, In : International Journal of Systematic and Evolutionary Microbiology. 66, 6, p. 2377-2381 5 p., 001041.

    Research output: Contribution to journalArticleScientificpeer-review

  78. Complete genome sequence of 'Halanaeroarchaeum sulfurireducens' M27-SA2, a sulfur-reducing and acetate-oxidizing haloarchaeon from the deep-sea hypersaline anoxic lake Medee

    Messina, E., Sorokin, D., Kublanov, I. V., Toshchakov, S., Lopatina, A., Arcadi, E., Smedile, F., La Spada, G., La Cono, V. & Yakimov, M. M., 13 May 2016, In : Standards in Genomic Sciences. 11, 35.

    Research output: Contribution to journalArticleScientificpeer-review

  79. Phenotypic and genomic properties of Chitinispirillum alkaliphilum gen. nov., sp. nov., a haloalkaliphilic anaerobic chitinolytic bacterium representing a novel class in the phylum fibrobacteres

    Sorokin, D., Rakitin, A. L., Gumerov, V. M., Beletsky, A. V., Sinninghe Damsté, J. S., Mardanov, A. V. & Ravin, N. V., 31 Mar 2016, In : Frontiers in Microbiology. 7, 407.

    Research output: Contribution to journalArticleScientificpeer-review

  80. Metagenomic insights into the uncultured diversity and physiology of microbes in four hypersaline soda lake brines

    Vavourakis, C. D., Ghai, R., Rodriguez-Valera, F., Sorokin, D., Tringe, S. G., Hugenholtz, P. & Muyzer, G., 25 Feb 2016, In : Frontiers in Microbiology. 7, 211.

    Research output: Contribution to journalArticleScientificpeer-review

  81. Elemantal sulfur and acetate can support life of a novel strictly anaerobic haloarchaeon

    Sorokin, D. Y., Kublanov, I. V., Gavrilov, S. N., Rojo, D., Roman, P., Golyshin, P. N., Slepak, V. Z., Smedile, F. & Ferrer, M., 2016, In : The ISME Journal: multidisciplinary journal of microbial ecology. 10, p. 240-252 13 p.

    Research output: Contribution to journalArticleScientificpeer-review

  82. Haloalkaline bioconversions for methane production from microalgae grown on sunlight

    Daelman, MRJ., Sorokin, D., Kruse, O., van Loosdrecht, MCM. & Strous, M., 2016, In : Trends in Biotechnology. 99, pp, p. 1-8 8 p.

    Research output: Contribution to journalArticleScientificpeer-review

  83. Importance of abiotic hydroxylamine conversion on nitrous oxide emissions during nitritation of reject water

    Soler-Jofra, A., Stevens, B., Hoekstra, M., Picioreanu, C., Sorokin, DY., van Loosdrecht, MCM. & Perez Canestro, JO., 2016, In : Chemical Engineering Journal. 287, p. 720-726 7 p.

    Research output: Contribution to journalArticleScientificpeer-review

  84. ‘Candidatus Desulfonatronobulbus propionicus’: a first haloalkaliphilic member of the order Syntrophobacterales from soda lakes

    Sorokin, D. Y. & Chernyh, N. A., 2016, In : Extremophiles: life under extreme conditions. 20, 6, p. 895-901

    Research output: Contribution to journalArticleScientificpeer-review

  85. 2015
  86. Partial genome sequence of Thioalkalivibrio thiocyanodenitrificans ARhD 1T, a chemolithoautotrophic haloalkaliphilic sulfur-oxidizing bacterium capable of complete denitrification

    Berben, T., Sorokin, D., Ivanova, N., Pati, A., Kyrpides, N., Goodwin, L. A., Woyke, T. & Muyzer, G., 26 Oct 2015, In : Standards in Genomic Sciences. 10, 1, 84.

    Research output: Contribution to journalArticleScientificpeer-review

  87. Desulfonatronobacter acetoxydans sp. nov., a first acetate-oxidizing, extremely salt-tolerant alkaliphilic SRB from a hypersaline soda lake

    Sorokin, D. Y., Chernyh, N. A. & Poroshina, M. N., 25 Sep 2015, In : Extremophiles: life under extreme conditions. 19, 5, p. 899-907 9 p.

    Research output: Contribution to journalArticleScientificpeer-review

  88. Cytochrome cbb3of Thioalkalivibrio is a Na+-pumping cytochrome oxidase

    Muntyan, M. S., Cherepanov, D. A., Malinen, A. M., Bloch, D. A., Sorokin, D., Severina, I. I., Ivashina, T. V., Lahti, R., Muyzer, G. & Skulachev, V. P., 23 Jun 2015, In : Proceedings of the National Academy of Sciences of the United States of America. 112, 25, p. 7695-7700 6 p.

    Research output: Contribution to journalArticleScientificpeer-review

  89. Complete genome sequence of thioalkalivibrio paradoxus type strain ARh1(T), an obligately chemolithoautotrophic haloalkaliphilic sulfur-oxidizing bacterium isolated from a Kenyan soda lake

    Berben, T., Sorokin, DY., Ivanova, N., Pati, A., Kyrpides, NC., Goodwin, LA., Woyke, T. & Muyzer, G., 2015, In : Standards in Genomic Sciences. 10, online, p. 105-110 6 p.

    Research output: Contribution to journalArticleScientificpeer-review

  90. Cytochromo cbb3 of thioalkalivibrio is a Na+- pumping cytochrome oxidase

    Muntyan, MS., Cherepanov, DA., Malinen, AM., Bloch, DA., Sorokin, DY., Severina, II., Ivashina, TV., Lahti, R., Muijzer, G. & Skulachev, VP., 2015, In : Proceedings of the National Academy of Sciences of the United States of America. 112, p. 7695-7700 6 p.

    Research output: Contribution to journalArticleScientificpeer-review

  91. Desulfonatronobacter acetioxydans sp. nov., - a first acetate-oxidizing extremely salt-tolerant alkaliphilic sulfate-reducing bacterium from a hypersaline soda lake

    Sorokin, DY., Chernyh, NA. & Poroshina, MN., 2015, In : Extremophiles: life under extreme conditions. 19, p. 899-907 9 p.

    Research output: Contribution to journalArticleScientificpeer-review

  92. Ecology and application of haloalkaliphilic anaerobic microbial communities

    Sousa, J. A. B., Sorokin, D. Y., Bijmans, M. F. M., Plugge, C. M. & Stams, A. J. M., 2015, In : Applied Microbiology and Biotechnology. 99, 22, p. 9331-9336

    Research output: Contribution to journalReview articleScientificpeer-review

  93. Ecology and application of haloalkaliphilic microbial communities

    Sousa, JAB., Sorokin, DY., Bijmans, MFM., Plugge, CM. & Stams, AJM., 2015, In : Applied Microbiology and Biotechnology. 99, p. 9331-9336 6 p.

    Research output: Contribution to journalArticleScientificpeer-review

  94. Functional microbiology of soda lakes

    Sorokin, DY., Banciu, HL. & Muijzer, G., 2015, In : Current Opinion in Microbiology. 25, p. 88-96 9 p.

    Research output: Contribution to journalArticleScientificpeer-review

  95. Halo(natrono)archaea isolated from hypersaline lakes utilize cellulose and chitin as growth substrates

    Sorokin, DY., Kublanov, IV., Toschakov, SV. & Kolganova, TV., 2015, In : Frontiers in Microbiology. 6, online, p. 942-955 14 p.

    Research output: Contribution to journalArticleScientificpeer-review

  96. Lipid recovery from a vegetable oil emulsion using microbial enrichment cultures

    Tamis, J., Sorokin, DY., Jiang, Y., van Loosdrecht, MCM. & Kleerebezem, R., 2015, In : Biotechnology for Biofuels. 8, p. 1-11 11 p.

    Research output: Contribution to journalArticleScientificpeer-review

  97. Methanogenesis at extremely haloalkaline conditions in the soda lakes of Kulunda Steppe (Altai, Russia)

    Sorokin, DY., Abbas, BA., Geleijnse, MAA., Pimenov, NV., Sukhacheva, MV. & van Loosdrecht, MCM., 2015, In : FEMS Microbiology Ecology. 91, 4, p. 1-12 12 p.

    Research output: Contribution to journalArticleScientificpeer-review

  98. Methanosalsum natronophilum sp. nov., and methanocalculus alkaliphilus sp. nov., haloalkaliphilic methanogens from hypersaline soda lakes

    Sorokin, DY., Abbas, BA., Merkel, AY., Irene, W., Rijpstra, C., Sukhacheva, MV. & van Loosdrecht, MCM., 2015, In : International Journal of Systematic and Evolutionary Microbiology. 65, p. 3739-3745 7 p.

    Research output: Contribution to journalArticleScientificpeer-review

  99. Partial genome sequence of Thioalkalivibrio thiocyanodenitrificans ARhD1(T), a chemolithoautotrophic haloalkaliphilic sulfur-oxidizing bacterium capable of complete denitrification

    Berben, T., Sorokin, DY., Ivanova, N., Pati, A., Kyrpides, NC., Goodwin, LA., Woyke, T. & Muyzer, G., 2015, In : Standards in Genomic Sciences. 10, online, p. 84-88 5 p.

    Research output: Contribution to journalArticleScientificpeer-review

  100. Partical genome sequence of the haloalkaliphilic soda lake bacterium Thioalkalivibrio thiocyanoxidans ARh2T

    Berben, T., Sorokin, DY., Ivanova, N., Pati, A., Kyrpides, NC., Goodwin, LA., Woyke, T. & Muyzer, G., 2015, In : Standards in Genomic Sciences. 10, online, p. 85-89 5 p.

    Research output: Contribution to journalArticleScientificpeer-review

  101. The chemistry and genetics of microbial thiosulfate disproportionation under haloalkaline conditions

    Melton, E. D., Sorokin, D. Y. & Muyzer, G., 2015, p. 2099-2099.

    Research output: Contribution to conferenceAbstractScientific

  102. 2014
  103. Algo-bacterial communities of the Kulunda steppe (Altai Region, Russia) Soda Lakes

    Samylina, OS., Sapozhnikov, FV., Gainova, OY., Ryabova, AV., Nikitin, MA. & Sorokin, DY., 2014, In : Microbiology. 83, p. 849-860 12 p.

    Research output: Contribution to journalArticleScientific

  104. Bacterial chitin utilization at halophilic conditions

    Sorokin, DY. & Kolganova, TV., 2014, In : Extremophiles: life under extreme conditions. 18, p. 243-248 6 p.

    Research output: Contribution to journalArticleScientificpeer-review

  105. Diversity of diazotrophs in the sediments of hypersaline salt and soda lakes analyzed with the use of the nifH gene as a molecular marker

    Tourova, TP., Slobodova, NV., Bumazhkin, BK., Sukhacheva, MV. & Sorokin, DY., 2014, In : Microbiology. 83, p. 634-647 14 p.

    Research output: Contribution to journalArticleScientific

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