1. 2020
  2. Thiohalobacter

    Sorokin, D. Y., Merkel, A. & Muyzer, G., Mar 2020, Bergey’s manual of systematics of archaea and bacteria. Oren, A. (ed.). John Wiley & Sons, p. 1-5 (Bergey’s Manual of Systematics of Archaea and Bacteria, on line edition).

    Research output: Chapter in Book/Report/Conference proceedingChapterScientific

  3. Complete genome sequence of “candidatus syntrophocurvum alkaliphilum” strain B(2M), obtained from the metagenome of a salt-tolerant alkaliphilic anaerobic syntrophic butyrate-degrading consortium

    Mardanov, A. V., Sorokin, D. Y., Beletsky, A. V. & Ravin, N. V., 2020, In : Microbiology Resource Announcements. 9, 6, 3 p., e01511-19.

    Research output: Contribution to journalArticleScientificpeer-review

  4. Effect of dimethyl disulfide on the sulfur formation and microbial community composition during the biological H2S removal from sour gas streams

    Kiragosyan, K., Picard, M., Sorokin, D. Y., Dijkstra, J., Klok, J. B. M., Roman, P. & Janssen, A. J. H., 2020, In : Journal of Hazardous Materials. 386, 11 p., 121916.

    Research output: Contribution to journalArticleScientificpeer-review

  5. Tackling the chemical diversity of microbial nonulosonic acids-a universal large-scale survey approach

    Kleikamp, H. B. C., Lin, Y. M., McMillan, D. G. G., Geelhoed, J. S., Naus-Wiezer, S. N. H., Van Baarlen, P., Saha, C., Louwen, R., Sorokin, D. Y., Van Loosdrecht, M. C. M. & Pabst, M., 2020, In : Chemical Science. 11, 11, p. 3074-3080

    Research output: Contribution to journalReview articleScientificpeer-review

  6. Thiohalorhabdus

    Sorokin, D. Y., Merkel, A. & Muyzer, G., 2020, Bergey’s manual of systematics of archaea and bacteria. Oren, A. & Whitman, W. B. (eds.). on line edition 2015 ed. John Wiley & Sons, p. 1-6 (Bergey’s Manual of Systematics of Archaea and Bacteria, Online © 2015 Bergey’s Manual Trust.).

    Research output: Chapter in Book/Report/Conference proceedingChapterScientific

  7. Trinuclear copper biocatalytic center forms an active site of thiocyanate dehydrogenase

    Tikhonova, T. V., Sorokin, D. Y., Hagen, W. R., Khrenova, M. G., Muyzer, G., Rakitina, T. V., Shabalin, I. G., Trofimov, A. A., Tsallagov, S. I. & Popov, V. O., 2020, In : Proceedings of the National Academy of Sciences of the United States of America. 117, 10, p. 5280-5290

    Research output: Contribution to journalArticleScientificpeer-review

  8. 2019
  9. Новые тиоцианатдегидрогеназы из сероокисляющих бактерий ThiohalobacterthiocyanaticusHRH1T и Guyparkeriasp.SCN-R1

    Shipkov N.S., Dergousova N.I., Rakitina T.V., Varfolomeeva L.A., Kulikova O.G., Tikhonova T.V., Popov V.O. & Sorokin, D. Y., Oct 2019, p. 259. 1 p.

    Research output: Contribution to conferenceAbstractScientific

  10. Novel genomic determinants of respiratory metabolism in extremophilic prokaryotes

    Gavrilov S., Toshchakov S., Slobodkin A., Elizarov I., Golyshina O., Golyshin P., Yakimov M., Kublanov I & Sorokin, D. Y., Jul 2019, p. 15.

    Research output: Contribution to conferenceAbstractScientific

  11. Role of CopC from Thioalkalivibrio paradoxus as a copper chaperone

    Kulikova O.G., Tikhonova T.V., Dergousova N.I., Osipov E.M., Popov V.O. & Sorokin, D. Y., Jun 2019, p. 117.

    Research output: Contribution to conferenceAbstractScientific

  12. Comparative genomics of Thiohalobacter thiocyanaticus HRh1T and guyparkeriasp. SCN-R1, halophilic chemolithoautotrophic sulfur-oxidizing gammaproteobacteria capable of using thiocyanate as energy source

    Tsallagov, S. I., Sorokin, D. Y., Tikhonova, T. V., Popov, V. O. & Muyzer, G., 1 Jan 2019, In : Frontiers in Microbiology. 10, MAY, 00898.

    Research output: Contribution to journalArticleScientificpeer-review

  13. Bioenergetics of haloalkaliphiles

    Muntyan, M. S., Muntyan M.S., Malinen A.M., Skulachev V.P., Sorokin, D. Y. & Skulachev, V. P., 2019, In : Studia Universitatis Babes-Bolyai. Biologia. 64, 1, p. 55-56

    Research output: Contribution to journalMeeting AbstractScientific

  14. Candidatus Methanohalarchaeum

    Sorokin, D. Y. & Merkel, A., 2019, Bergey’s Manual of Systematics of Archaea and Bacteria, Online © 2015 Bergey’s Manual Trust. Whitman, W. B. (ed.). John Wiley & Sons, 3 p.

    Research output: Chapter in Book/Report/Conference proceedingChapterScientific

  15. Corrigendum to “Natrachaeobius chitinivorans gen. nov., sp. nov., and Natrarchaeobius haloalkaliphilus sp. nov., alkaliphilic, chitin-utilizing haloarchaea from hypersaline alkaline lakes” (Systematic and Applied Microbiology (2019) 42(3) (309–318), (S0723202018304387), (10.1016/j.syapm.2019.01.001))

    Sorokin, D. Y., Elcheninov, A. G., Toshchakov, S. V., Bale, N. J., Damsté, J. S. S., Khijniak, T. V. & Kublanov, I. V., 2019, In : Systematic and Applied Microbiology. 42, 5, 126003.

    Research output: Contribution to journalComment/Letter to the editorScientific

  16. Corrigendum to “Natronobiforma cellulositropha gen. nov., sp. nov., a novel haloalkaliphilic member of the family Natrialbaceae (class Halobacteria) from hypersaline alkaline lakes” [Syst. Appl. Microbiol. 41 (2018) 355–362](S072320201830095X)(10.1016/j.syapm.2018.04.002)

    Sorokin, D. Y., Khijniak, T. V., Kostrikina, N. A., Elcheninov, A. G., Toshchakov, S. V., Bale, N. J., Sinninghe Damsté, J. S. & Kublanov, I. V., 2019, In : Systematic and Applied Microbiology. 42, 2, p. 261-262

    Research output: Contribution to journalComment/Letter to the editorScientific

  17. Desulfurispirillum

    Sorokin, D. Y., Merkel, A. & Haggblom, M. M., 2019, Bergey’s Manual of Systematics of Archaea and Bacteria, Online © 2015 Bergey’s Manual Trust.. Whitman, W. B. (ed.). 2019 ed. John Wiley & Sons, 5 p.

    Research output: Chapter in Book/Report/Conference proceedingChapterScientific

  18. Dethiobacter

    Sorokin, D. Y. & Merkel, A., 2019, Bergey’s Manual of Systematics of Archaea and Bacteria, Online © 2015 Bergey’s Manual Trust. Whitman, W. B. (ed.). John Wiley & Sons, 5 p.

    Research output: Chapter in Book/Report/Conference proceedingChapterScientific

  19. Diversity and distribution of sulfur oxidation-related genes in thioalkalivibrio, a genus of chemolithoautotrophic and haloalkaliphilic sulfur-oxidizing bacteria

    Berben, T., Overmars, L., Sorokin, D. Y. & Muyzer, G., 2019, In : Frontiers in Microbiology. 10, 15 p., 160.

    Research output: Contribution to journalArticleScientificpeer-review

  20. Dusulfurispira

    Sorokin, D. Y. & Merkel, A., 2019, Bergey’s Manual of Systematics of Archaea and Bacteria, Online © 2015 Bergey’s Manual Trust. Whitman, W. B. (ed.). 2019 ed. John Wiley & Sons, 4 p.

    Research output: Chapter in Book/Report/Conference proceedingChapterScientific

  21. Halococcoides cellulosivorans gen. nov., sp. nov., an extremely halophilic cellulose-utilizing haloarchaeon from hypersaline lakes

    Sorokin, D. Y., Khijniak, T. V., Elcheninov, A. G., Toshchakov, S. V., Kostrikina, N. A., Bale, N. J., Sinninghe Damsté, J. S. & Kublanov, I. V., 2019, In : International Journal of Systematic and Evolutionary Microbiology. 69, 5, p. 1327-1335 9 p., 003312.

    Research output: Contribution to journalArticleScientificpeer-review

  22. Increasing the Selectivity for Sulfur Formation in Biological Gas Desulfurization

    De Rink, R., Klok, J. B. M., Van Heeringen, G. J., Sorokin, D. Y., Ter Heijne, A., Zeijlmaker, R., Mos, Y. M., De Wilde, V., Keesman, K. J. & Buisman, C. J. N., 2019, In : Environmental Science and Technology. 53, 8, p. 4519-4527

    Research output: Contribution to journalArticleScientificpeer-review

  23. Metagenomes and metatranscriptomes shed new light on the microbial-mediated sulfur cycle in a Siberian soda lake

    Vavourakis, C. D., Mehrshad, M., Balkema, C., Van Hall, R., Andrei, A. Ş., Ghai, R., Sorokin, D. Y. & Muyzer, G., 2019, In : BMC Biology. 17, 1, 20 p., 69.

    Research output: Contribution to journalArticleScientificpeer-review

  24. Methanogens and Methanogenesis in Hypersaline Environments

    Sorokin, D. Y. & McGenety, T., 2019, Biogenesis of Hydrocarbons. Stams, A. J. M. & Sousa, D. Z. (eds.). Springer, p. 1-24 (Handbook of Hydrocarbon and Lipid Microbiology).

    Research output: Chapter in Book/Report/Conference proceedingChapterScientificpeer-review

  25. Methanonatronarchaeaceae

    Sorokin, D. Y. & Merkel, A., 2019, Bergey’s Manual of Systematics of Archaea and Bacteria, Online © 2015 Bergey’s Manual Trust. Whitman, W. B. (ed.). 2019 ed. John Wiley & Sons, 2 p.

    Research output: Chapter in Book/Report/Conference proceedingChapterScientific

  26. Methanonatronarchaeales

    Sorokin, D. Y. & Merkel, A., 2019, Bergey’s Manual of Systematics of Archaea and Bacteria, Online © 2015 Bergey’s Manual Trust. Whitman, W. B. (ed.). 2019 ed. John Wiley & Sons, 1 p.

    Research output: Chapter in Book/Report/Conference proceedingChapterScientific

  27. Methanonatronarchaeia

    Sorokin, D. Y. & Merkel, A., 2019, Bergey’s Manual of Systematics of Archaea and Bacteria, Online © 2015 Bergey’s Manual Trust. Whitman, W. B. (ed.). 2019 ed. John Wiley & Sons, 1 p.

    Research output: Chapter in Book/Report/Conference proceedingChapterScientific

  28. Methanonatronarchaeum

    Sorokin, D. Y. & Merkel, A., 2019, Bergey’s Manual of Systematics of Archaea and Bacteria, Online © 2015 Bergey’s Manual Trust. Whitman, W. B. (ed.). 2019 ed. John Wiley & Sons, 6 p.

    Research output: Chapter in Book/Report/Conference proceedingChapterScientific

  29. Microbial diversity in the deepsea anaerobic hypersaline environments with emphasis on the role of anaerobic haloarchaea in C and S cycles

    Yakimov M.M., La Cono V., La Cono, V. & Sorokin, D. Y., 2019, In : Studia Universitatis Babes-Bolyai. Biologia. 64, 1, p. 49

    Research output: Contribution to journalMeeting AbstractScientific

  30. Natrarchaeobius chitinivorans gen. nov., sp. nov., and Natrarchaeobius halalkaliphilus sp. nov., alkaliphilic, chitin-utilizing haloarchaea from hypersaline alkaline lakes

    Sorokin, D. Y., Elcheninov, A. G., Toshchakov, S. V., Bale, N. J., Sinninghe Damsté, J. S., Khijniak, T. V. & Kublanov, I. V., 2019, In : Systematic and Applied Microbiology. 42, 3, p. 309-318 10 p.

    Research output: Contribution to journalArticleScientificpeer-review

  31. Natronobiforma

    Sorokin, D. Y., Oren, A., Elcheninov, A. G. & Kublanov, I. V., 2019, Bergey's Manual of Systematics of Archaea and Bacteria. John Wiley & Sons, p. 1-7 (Bergey’s Manual of Systematics of Archaea and Bacteria, Online © 2015 Bergey’s Manual Trust. This article is © 2019 Bergey’s Manual Trust.).

    Research output: Chapter in Book/Report/Conference proceedingChapterScientific

  32. Natronolimnobius sulfurireducens sp. nov. and Halalkaliarchaeum desulfuricum gen. nov., sp. nov., the first sulfur-respiring alkaliphilic haloarchaea from hypersaline alkaline lakes

    Sorokin, D. Y., Yakimov, M., Messina, E., Merkel, A. Y., Bale, N. J. & Sinninghe Damsté, J. S., 2019, In : International Journal of Systematic and Evolutionary Microbiology. 69, 9, p. 2662-2673

    Research output: Contribution to journalArticleScientificpeer-review

  33. New insights into the polar lipid composition of extremely halo(alkali)philic euryarchaea from hypersaline lakes

    Bale, N. J., Sorokin, D. Y., Hopmans, E. C., Koenen, M., Irene Rijpstra, W. C., Villanueva, L., Wienk, H. & Sinninghe Damsté, J. S., 2019, In : Frontiers in Microbiology. 10, MAR, 24 p., 377.

    Research output: Contribution to journalArticleScientificpeer-review

  34. Preliminary characterization of two novel thiocyanate dehydrogenases from halophilic sulfur oxidizing Gammaproteobacteria Thiohalobacter thiocyanaticus HRh1T and Guyparkeria sp. SCN-R1

    Shipkov N.S., Dergousova N.I., Rakitina T.V., Tsallagov S.I., Tikhonova T.V., Popov V.O. & Sorokin, D. Y., 2019, p. 117.

    Research output: Contribution to conferenceAbstractScientific

  35. Reply to ‘Evolutionary placement of Methanonatronarchaeia’

    Sorokin, D. Y., Makarova, K. S., Abbas, B., Ferrer, M., Golyshin, P. N., Galinski, E. A., Ciorda, S., Mena, M. C., van Loosdrecht, M. C. M. & More Authors, 2019, In : Nature Microbiology. 4, 4, p. 560-561

    Research output: Contribution to journalLetterScientificpeer-review

  36. Sulfate-reducing bacteria that produce exopolymers thrive in the calcifying zone of a hypersaline cyanobacterial mat

    Spring, S., Sorokin, D. Y., Verbarg, S., Rohde, M., Woyke, T. & Kyrpides, N. C., 2019, In : Frontiers in Microbiology. 10, APR, 19 p., 862.

    Research output: Contribution to journalArticleScientificpeer-review

  37. The patterns of nitrogen fixation in haloalkaliphilic phototrophic communities of Kulunda Steppe soda lakes (Altai, Russia)

    Samylina, O. S., Namsaraev, Z. B., Slobodova, N. V., Zelenev, V. V., Borisenko, G. V. & Sorokin, D. Y., 2019, In : FEMS Microbiology Ecology. 95, 11, 13 p., fiz174.

    Research output: Contribution to journalArticleScientificpeer-review

  38. Transcriptomic analysis of two thioalkalivibriospecies under arsenite stress revealed a potential candidate gene for an alternative arsenite oxidation pathway

    Ahn, A. C., Cavalca, L., Colombo, M., Schuurmans, J. M., Sorokin, D. Y. & Muyzer, G., 2019, In : Frontiers in Microbiology. 10, JULY, 01514.

    Research output: Contribution to journalArticleScientificpeer-review

  39. Разнообразие светозависимых генераторов энергии у экстремально алкалифильных микроорганизмов

    Muntyan M.S., Chitrina L.V., Zaspa A.A., Skulachev V.P. & Sorokin, D. Y., 2019, In : Frontiers in Microbiology. 9, p. 84-85

    Research output: Contribution to journalMeeting AbstractScientific

  40. 2018
  41. Methanonatronarchaeum thermophilum gen. Nov., sp. nov. and ’Candidatus methanohalarchaeum thermophilum’, extremely halo(natrono)philic methyl-reducing methanogens from hypersaline lakes comprising a new euryarchaeal class Methanonatronarchaeia classis nov.

    Sorokin, D. Y., Merkel, A. Y., Abbas, B., Makarova, K. S., Rijpstra, W. I. C., Koenen, M., Sinninghe Damsté, J. S., Galinski, E. A., Koonin, E. V. & Van Loosdrecht, M. C. M., 1 Jul 2018, In : International Journal of Systematic and Evolutionary Microbiology. 68, 7, p. 2199-2208 10 p., 002810.

    Research output: Contribution to journalArticleScientificpeer-review

  42. Structure of the flavocytochrome C sulfide dehydrogenase associated with the copper-binding protein CopC from the haloalkaliphilic sulfuroxidizing bacterium thioalkalivibrio paradoxus ArH 1

    Osipov, E. M., Lilina, A. V., Tsallagov, S. I., Safonova, T. N., Sorokin, D. Y., Tikhonova, T. V. & Popova, V. O., 1 Jul 2018, In : Acta Crystallographica Section D: Structural Biology. 74, 7, p. 632-642

    Research output: Contribution to journalArticleScientificpeer-review

  43. Effect of salinity on diazotrophic activity and microbial composition of phototrophic communities from Bitter-1 soda lake (Kulunda Steppe, Russia)

    Namsaraev, Z., Samylina, O., Sukhacheva, M., Borisenko, G., Sorokin, D. Y. & Tourova, T., 16 Apr 2018, In : Extremophiles: life under extreme conditions. p. 1-13 13 p.

    Research output: Contribution to journalArticleScientificpeer-review

  44. A metagenomics roadmap to the uncultured genome diversity in hypersaline soda lake sediments

    Vavourakis, C. D., Andrei, A. S., Mehrshad, M., Ghai, R., Sorokin, D. Y. & Muyzer, G., 2018, In : Microbiome. 6, 1, 168.

    Research output: Contribution to journalArticleScientificpeer-review

  45. Halodesulfurarchaeum

    Sorokin, D. Y., Messina, E. & Yakimov, M., 2018, Bergey’s Manual of Systematics of Archaea and Bacteria, Online. Whitman, W. B. (ed.). John Wiley & Sons, p. 1-6

    Research output: Chapter in Book/Report/Conference proceedingChapterScientific

  46. Metabolism and occurrence of methanogenic and sulfate-reducing syntrophic acetate oxidizing communities in haloalkaline environments

    Timmers, P. H. A., Vavourakis, C. D., Kleerebezem, R., Sinninghe Damsté, J. S., Muyzer, G., Stams, A. J. M., Sorokin, D. Y. & Plugge, C. M., 2018, In : Frontiers in Microbiology. 9, DEC, 18 p., 3039.

    Research output: Contribution to journalArticleScientificpeer-review

  47. Methanosalsum

    Sorokin, D. Y. & Merkel, A., 2018, Bergey’s Manual of Systematics of Archaea and Bacteria, Online. Whitman, W. B. (ed.). John Wiley & Sons, p. 1-8

    Research output: Chapter in Book/Report/Conference proceedingChapterScientific

  48. Natronobiforma cellulositropha gen. nov., sp. nov., a novel haloalkaliphilic member of the family Natrialbaceae (class Halobacteria) from hypersaline alkaline lakes

    Sorokin, D. Y., Khijniak, T. V., Kostrikina, N. A., Elcheninov, A. G., Toshchakov, S. V., Bale, N. J., Damsté, J. S. S. & Kublanov, I. V., 2018, In : Systematic and Applied Microbiology. 8 p.

    Research output: Contribution to journalArticleScientificpeer-review

  49. Nitrolancea

    Sorokin, D. Y., Lucker, S. & Daims, H., 2018, Bergey’s Manual of Systematics of Archaea and Bacteria, Online. Whitman, W. B. (ed.). John Wiley & Sons, p. 1-6

    Research output: Chapter in Book/Report/Conference proceedingChapterScientific

  50. Novel route of thiocyanate utilization in microorganisms: Discovery of a novel copper enzyme - thiocyanate dehydrogenase: P47

    Tikhonova, TV., Sorokin, D. Y. & More Authors, 2018.

    Research output: Contribution to conferencePosterScientific

  51. Phenotypic and genomic properties of a novel deep-lineage haloalkaliphilic member of the phylum Balneolaeota from soda lakes possessing Na+-translocating proteorhodopsin

    Sorokin, D. Y., Muntyan, M. S., Toshchakov, S. V., Korzhenkov, A. & Kublanov, I. V., 2018, In : Frontiers in Microbiology. 9, 11 p., 2672.

    Research output: Contribution to journalArticleScientificpeer-review

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