1. 2019
  2. GPU Accelerated Sequence Alignment with Trace-back for GATK HaplotypeCaller

    Ren, S., Ahmed, N., Bertels, K. & Al-Ars, Z., 17 Jan 2019, (Accepted/In press) In : BMC Genomics.

    Research output: Contribution to journalArticleScientificpeer-review

  3. Skeleton-based Synthesis Flow for Computation-In-Memory Architectures

    Yu, J., Nane, R., Ashraf, I., Taouil, M., Hamdioui, S., Corporaal, H. & Bertels, K., 2019, (Accepted/In press) In : IEEE Transactions on Emerging Topics in Computing. PP, p. 1-13 13 p.

    Research output: Contribution to journalArticleScientificpeer-review

  4. 2018
  5. Comparative Analysis of System-Level Acceleration Techniques in Bioinformatics: A Case Study of Accelerating the Smith-Waterman Algorithm for BWA-MEM

    Houtgast, E., Sima, V., Bertels, K. & Al-Ars, Z., 29 Oct 2018, 2018 IEEE 18th International Conference on BioInformatics and BioEngineering (BIBE). Tang, S-M. (ed.). p. 243-246 4 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  6. Decoding small surface codes with feedforward neural networks

    Varsamopoulos, S., Criger, B. & Bertels, K., 1 Jan 2018, In : Quantum Science and Technology. 3, 1, p. 1-12 12 p., 015004.

    Research output: Contribution to journalArticleScientificpeer-review

  7. A Mapping Methodology of Boolean Logic Circuits on Memristor Crossbar

    Xie, L., Du Nguyen, H. A., Taouil, M., Hamdioui, S. & Bertels, K., 2018, In : IEEE Transactions on Computer - Aided Design of Integrated Circuits and Systems. 37, 2, p. 311-323 13 p.

    Research output: Contribution to journalArticleScientificpeer-review

  8. An Efficient GPU-based de Bruijn Graph Construction Algorithm for Micro-Assembly

    Ren, S., Ahmed, N., Bertels, K. & Al-Ars, Z., 2018, Proceedings - 2018 IEEE 18th annual IEEE International Conference on BioInformatics and BioEngineering (BIBE 2018). Bourbakis, N. G. & Kavraki, D. (eds.). IEEE, p. 67-72 6 p. 8567459

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  9. Early DNA Variant Calling Using Incomplete DNA Datasets

    Al-Ars, Z., Ahmed, N. & Bertels, K., 2018, IPC No. G06F, Priority date 9 Nov 2016, Priority No. WO 2018088896

    Research output: PatentOther research output

  10. Efficient Acceleration of the Pair-HMMs Forward Algorithm for GATK HaplotypeCaller on Graphics Processing Units

    Ren, S., Bertels, K. & Al-Ars, Z., 2018, In : Evolutionary Bioinformatics. 14, p. 1-12 12 p.

    Research output: Contribution to journalArticleScientificpeer-review

  11. Hardware acceleration of BWA-MEM genomic short read mapping for longer read lengths

    Houtgast, E. J., Sima, V-M., Bertels, K. & Al-Ars, Z., 2018, In : Computational Biology and Chemistry. 75, p. 54-64 11 p.

    Research output: Contribution to journalArticleScientificpeer-review

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