1. 2013
  2. Efficient calculation of compound similarity based on maximum common subgraphs and its application to prediction of gene transcript levels

    van Berlo, RJP., Winterbach, W., de Groot, MJL., Bender, A., Verheijen, PJT., Reinders, MJT. & de Ridder, D., 2013, In : International Journal of Bioinformatics Research and Applications. 9, p. 407-432 26 p.

    Research output: Contribution to journalArticleScientificpeer-review

  3. 2009
  4. Metabolite and reaction inference based on enzyme specificities

    de Groot, MJL., van Berlo, RJP., van Winden, WA., Verheijen, PJT., Reinders, MJT. & de Ridder, D., 2009, In : Bioinformatics. 25, 22, p. 2975-2982 8 p.

    Research output: Contribution to journalArticleScientificpeer-review

  5. 2008
  6. M-PAS: a comprehensive and flexible metabolic pathway alignment and scoring method

    Li, Y., de Ridder, D., de Groot, MJL. & Reinders, MJT., 2008, Proceedings of the fourteenth annual conference of the Advanced School for Computing and Imaging. Smit, GJM., Epema, DHJ. & Lew, MS. (eds.). Delft: ASCI, p. 121-144 24 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  7. Metabolic pathway alignment (M-PAL) reveals diversity and alternatives in conserved networks

    Li, Y., de Ridder, D., de Groot, MJL. & Reinders, MJT., 2008, Proceedings of the 6th Asia-Pacific Bioinformatics Conference. Brazma, A., Miyano, S. & Akutsu, T. (eds.). London, UK: Imperial college press, p. 272-285 14 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  8. Metabolic pathway alignment between species using a comprehensive and flexible similarity measure

    Li, Y., de Ridder, D., de Groot, MJL. & Reinders, MJT., 2008, In : BMC Systems Biology. p. 1-22 22 p.

    Research output: Contribution to journalArticleScientificpeer-review

  9. 2007
  10. Exploring the metabolome through catalytic promiscuity

    de Groot, MJL., van Winden, WA., Verheijen, PJT., Reinders, MJT. & de Ridder, D., 2007.

    Research output: Contribution to conferencePosterProfessional

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