1. 2013
  2. Efficient calculation of compound similarity based on maximum common subgraphs and its application to prediction of gene transcript levels

    van Berlo, RJP., Winterbach, W., de Groot, MJL., Bender, A., Verheijen, PJT., Reinders, MJT. & de Ridder, D., 2013, In : International Journal of Bioinformatics Research and Applications. 9, p. 407-432 26 p.

    Research output: Contribution to journalArticleScientificpeer-review

  3. 2011
  4. Predicting metabolic fluxes using gene expression differences as constraints

    van Berlo, RJP., de Ridder, D., Daran, JM., Daran-Lapujade, PAS., Teusink, B. & Reinders, MJT., 2011, In : IEEE - ACM Transactions on Computational Biology and Bioinformatics. 8, 1, p. 206-216 11 p.

    Research output: Contribution to journalArticleScientificpeer-review

  5. 2010
  6. Vertical integration of high-throughput measurements to derive functional and regulatory interactions in S. cerevisiae

    van Berlo, RJP., 2010, Delft: Mediamatica /Technische Universiteit Delft. 148 p.

    Research output: ThesisDissertation (TU Delft)Scientific

  7. 2009
  8. Metabolite and reaction inference based on enzyme specificities

    de Groot, MJL., van Berlo, RJP., van Winden, WA., Verheijen, PJT., Reinders, MJT. & de Ridder, D., 2009, In : Bioinformatics. 25, 22, p. 2975-2982 8 p.

    Research output: Contribution to journalArticleScientificpeer-review

  9. Shifts in growth strategies reflect tradeoffs in cellular economics

    Molenaar, D., van Berlo, RJP., de Ridder, D. & Teusink, B., 2009, In : Molecular Systems Biology. 5, 323, p. 1-10 10 p.

    Research output: Contribution to journalArticleScientificpeer-review

  10. 2008
  11. Revealing cellular objective functions by incorparating gene expression-based contraints in a flux balance analysis framework

    van Berlo, RJP., de Ridder, D. & Reinders, MJT., 2008, Proceedings of the fourteenth annual conference of the Advanced School for Computing and Imaging. Smit, GJM., Epema, DHJ. & Lew, MS. (eds.). Delft: ASCI, p. 258-264 7 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  12. 2007
  13. Predicting metabolic flow-routes based on gene expression data

    van Berlo, RJP., de Ridder, D. & Reinders, MJT., 2007, Proceedings of the thirtheenth annual conference of the Advanced School for Computing and Imaging. Jansen, F. W., Pierre, G. E. O., Veenman, C. J. & Heijnsdijk, J. W. J. (eds.). Delft: ASCI, p. 275-281 7 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  14. Protein complex prediction using an integrative bioinformatics approach

    van Berlo, RJP., Wessels, LFA., de Ridder, D. & Reinders, MJT., 2007, In : Journal of Bioinformatics and Computational Biology. 5, 4, p. 839-864 26 p.

    Research output: Contribution to journalArticleScientificpeer-review

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