1. Approximated and User Steerable tSNE for Progressive Visual Analytics

    Pezzotti, N., Lelieveldt, B. P. F., van der Maaten, L., Höllt, T., Eisemann, E. & Vilanova, A., 2016, In : IEEE Transactions on Visualization and Computer Graphics. 23, 7, p. 1739-1752 14 p.

    Research output: Contribution to journalArticleScientificpeer-review

  2. BrainScope: Interactive visual exploration of the spatial and temporal human brain transcriptome

    Huisman, S. M. H., Van Lew, B., Mahfouz, A., Pezzotti, N., Höllt, T., Michielsen, L., Vilanova, A., Reinders, M. J. T. & Lelieveldt, B. P. F., 2017, In : Nucleic Acids Research. 45, 10, e83.

    Research output: Contribution to journalArticleScientificpeer-review

  3. Comparative Visualization for Diffusion Tensor Imaging Group Study at Multiple Levels of Detail

    Zhang, C., Höllt, T., Caan, M. W. A., Eisemann, E. & Vilanova, A., 2017, Eurographics Workshop on Visual Computing for Biology and Medicine (VCBM). Bruckner, S., Hennemuth, A. & Kainz, B. (eds.). Eurographics Association, p. 1-10 10 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  4. Conserved cell types with divergent features in human versus mouse cortex

    Hodge, R. D., Bakken, T. E., Miller, J. A., Smith, K. A., Barkan, E. R., Graybuck, L. T., Close, J. L., Hollt, T., Mahfouz, A., Lelieveldt, B. & More Authors, 2019, In : Nature. 573, p. 61-68 8 p.

    Research output: Contribution to journalArticleScientificpeer-review

  5. CyTOFmerge: integrating mass cytometry data across multiple panels

    Abdelaal, T., Hollt, T., van Unen, V., Lelieveldt, B. P. F., Koning, F., Reinders, M. & Mahfouz, A., 2019, In : Bioinformatics. 35, 20, p. 4063-4071 9 p.

    Research output: Contribution to journalArticleScientificpeer-review

  6. CyteGuide: Visual Guidance for Hierarchical Single-Cell Analysis

    Hollt, T., Pezzotti, N., van Unen, V., Koning, F., Lelieveldt, B. P. F. & Vilanova, A., 2018, In : IEEE Transactions on Visualization and Computer Graphics. 24, 1, p. 739-748 10 p., 8017575.

    Research output: Contribution to journalArticleScientificpeer-review

  7. Cytofast: A workflow for visual and quantitative analysis of flow and mass cytometry data to discover immune signatures and correlations

    Beyrend, G., Stam, K., Hollt, T., Ossendorp, F. & Arens, R., 2018, In : Computational and Structural Biotechnology Journal. 16, p. 435-442 8 p.

    Research output: Contribution to journalArticleScientificpeer-review

  8. Cytosplore: Interactive Immune Cell Phenotyping for Large Single-Cell Datasets

    Hollt, T., Pezzotti, N., van Unen, V., Koning, F., Eisemann, E., Lelieveldt, B. P. F. & Vilanova Bartroli, A., 2016, In : Computer Graphics Forum (online). 35, 3, p. 171-180 10 p.

    Research output: Contribution to journalArticleScientificpeer-review

  9. Cytosplore: Interactive Visual Single-Cell Profiling of the Immune System

    Hollt, T., Pezzotti, N., van Unen, V., Koning, F., Eisemann, E., Lelieveldt, B. & Vilanova, A., 2019, Eurographics 2019 : Dirk Bartz Prize. Bruckner, S. & Steffen, O. J. (eds.). The Eurographics Association, p. 1-4 4 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  10. DeepEyes: Progressive Visual Analytics for Designing Deep Neural Networks

    Pezzotti, N., Hollt, T., van Gemert, J., Lelieveldt, B., Eisemann, E. & Vilanova Bartroli, A., 2018, In : IEEE Transactions on Visualization and Computer Graphics. 24, 1, p. 98-108 11 p., 8019872.

    Research output: Contribution to journalArticleScientificpeer-review

  11. Focus+context exploration of hierarchical embeddings

    Hollt, T., Vilanova, A., Pezzotti, N., Lelieveldt, B. & Hauser, H., 2019, In : Computer Graphics Forum. 38, 3, p. 569-579 11 p.

    Research output: Contribution to journalArticleScientificpeer-review

  12. GPGPU Linear Complexity t-SNE Optimization

    Pezzotti, N., Thijssen, J., Mordvinstev, A., Hollt, T., Van Lew, B., Lelieveldt, B., Eisemann, E. & Vilanova, A., 2020, In : IEEE Transactions on Visualization and Computer Graphics. 26, 1, p. 1172-1181 10 p., 8811606.

    Research output: Contribution to journalArticleScientificpeer-review

  13. Guidelines for the use of flow cytometry and cell sorting in immunological studies (second edition)

    Cossarizza, A., Chang, H-D., Radbruch, A., Acs, A., Adam, D., Hollt, T., Adam-Klages, S. & More Authors, 2019, In : European Journal of Immunology. 49, 10, p. 1457-1973 517 p.

    Research output: Contribution to journalArticleScientificpeer-review

  14. Helminth infections drive heterogeneity in human type 2 and regulatory cells

    de Ruiter, K., Jochems, S. P., Tahapary, D. L., Stam, K. A., König, M., van Unen, V., Höllt, T., Mbow, M., Lelieveldt, B. P. F. & More Authors, 2020, In : Science Translational Medicine. 12, 524, 8 p., eaaw3703.

    Research output: Contribution to journalArticleScientificpeer-review

  15. Heterogeneity of circulating CD8 T-cells specific to islet, neo-antigen and virus in patients with type 1 diabetes mellitus

    Laban, S., Suwandi, J. S., van Unen, V., Pool, J., Wesselius, J., Hollt, T., Pezzotti, N., Vilanova, A., Lelieveldt, B. P. F. & Roep, B. O., 2018, In : PLoS ONE. 13, 8, p. 1-15 15 p., e0200818.

    Research output: Contribution to journalArticleScientificpeer-review

  16. Hierarchical Stochastic Neighbor Embedding

    Pezzotti, N., Hollt, T., Lelieveldt, B. P. F., Eisemann, E. & Vilanova Bartroli, A., 2016, In : Computer Graphics Forum (online). 35, 3, p. 21-30 10 p.

    Research output: Contribution to journalArticleScientificpeer-review

  17. High-dimensional cytometric analysis of colorectal cancer reveals novel mediators of antitumour immunity

    De Vries, N. L., Van Unen, V., Ijsselsteijn, M. E., Abdelaal, T., Van Der Breggen, R., Farina Sarasqueta, A., Mahfouz, A., Peeters, K. C. M. J., Höllt, T., Lelieveldt, B. P. F., Koning, F. & De Miranda, N. F. C. C., 2019, In : Gut. p. 1-13 13 p.

    Research output: Contribution to journalArticleScientificpeer-review

  18. ImaCytE: Visual Exploration of Cellular Microenvironments for Imaging Mass

    van Unen, V., Hollt, T., Koning, F. & Lelieveldt, B., 2020, (Accepted/In press) In : IEEE Transactions on Visualization and Computer Graphics. p. 1-13 13 p.

    Research output: Contribution to journalArticleScientificpeer-review

  19. Interactive Visual Exploration of 3D Mass Spectrometry Imaging Data Using Hierarchical Stochastic Neighbor Embedding Reveals Spatiomolecular Structures at Full Data Resolution

    Abdelmoula, W. M., Pezzotti, N., Hollt, T., Dijkstra, J., Vilanova, A., McDonnell, L. A. & Lelieveldt, B., 2018, In : Journal of Proteome Research. 17, 3, p. 1054-1064 11 p.

    Research output: Contribution to journalArticleScientificpeer-review

  20. Mass Cytometry of the Human Mucosal Immune System Identifies Tissue- and Disease-Associated Immune Subsets

    van Unen, V., Li, N., Molendijk, I., Temurhan, M., Hollt, T., van der Meulen-de Jong, A. E., Verspaget, H. W., Mearin, M. L., Mulder, C. J., van Bergen, J., Lelieveldt, B. P. F. & Koning, F., 2016, In : Immunity. 44, 5, p. 1227-1239 13 p.

    Research output: Contribution to journalArticleScientificpeer-review

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