1. Approximated and User Steerable tSNE for Progressive Visual Analytics

    Pezzotti, N., Lelieveldt, B. P. F., van der Maaten, L., Höllt, T., Eisemann, E. & Vilanova, A., 2016, In : IEEE Transactions on Visualization and Computer Graphics. 23, 7, p. 1739-1752 14 p.

    Research output: Contribution to journalArticleScientificpeer-review

  2. BrainScope: Interactive visual exploration of the spatial and temporal human brain transcriptome

    Huisman, S. M. H., Van Lew, B., Mahfouz, A., Pezzotti, N., Höllt, T., Michielsen, L., Vilanova, A., Reinders, M. J. T. & Lelieveldt, B. P. F., 2017, In : Nucleic Acids Research. 45, 10, e83.

    Research output: Contribution to journalArticleScientificpeer-review

  3. Comparative Visualization for Diffusion Tensor Imaging Group Study at Multiple Levels of Detail

    Zhang, C., Höllt, T., Caan, M. W. A., Eisemann, E. & Vilanova, A., 2017, Eurographics Workshop on Visual Computing for Biology and Medicine (VCBM). Bruckner, S., Hennemuth, A. & Kainz, B. (eds.). Eurographics Association, p. 1-10 10 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  4. Conserved cell types with divergent features in human versus mouse cortex

    Hodge, R. D., Bakken, T. E., Miller, J. A., Smith, K. A., Barkan, E. R., Graybuck, L. T., Close, J. L., Hollt, T., Mahfouz, A., Lelieveldt, B. & More Authors, 2019, In : Nature. 573, p. 61-68 8 p.

    Research output: Contribution to journalArticleScientificpeer-review

  5. CyTOFmerge: integrating mass cytometry data across multiple panels

    Abdelaal, T., Hollt, T., van Unen, V., Lelieveldt, B. P. F., Koning, F., Reinders, M. & Mahfouz, A., 2019, In : Bioinformatics. 35, 20, p. 4063-4071 9 p.

    Research output: Contribution to journalArticleScientificpeer-review

  6. CyteGuide: Visual Guidance for Hierarchical Single-Cell Analysis

    Hollt, T., Pezzotti, N., van Unen, V., Koning, F., Lelieveldt, B. P. F. & Vilanova, A., 2018, In : IEEE Transactions on Visualization and Computer Graphics. 24, 1, p. 739-748 10 p., 8017575.

    Research output: Contribution to journalArticleScientificpeer-review

  7. Cytofast: A workflow for visual and quantitative analysis of flow and mass cytometry data to discover immune signatures and correlations

    Beyrend, G., Stam, K., Hollt, T., Ossendorp, F. & Arens, R., 2018, In : Computational and Structural Biotechnology Journal. 16, p. 435-442 8 p.

    Research output: Contribution to journalArticleScientificpeer-review

  8. Cytosplore: Interactive Immune Cell Phenotyping for Large Single-Cell Datasets

    Hollt, T., Pezzotti, N., van Unen, V., Koning, F., Eisemann, E., Lelieveldt, B. P. F. & Vilanova Bartroli, A., 2016, In : Computer Graphics Forum (online). 35, 3, p. 171-180 10 p.

    Research output: Contribution to journalArticleScientificpeer-review

  9. Cytosplore: Interactive Visual Single-Cell Profiling of the Immune System

    Hollt, T., Pezzotti, N., van Unen, V., Koning, F., Eisemann, E., Lelieveldt, B. & Vilanova, A., 2019, Eurographics 2019 : Dirk Bartz Prize. Bruckner, S. & Steffen, O. J. (eds.). The Eurographics Association, p. 1-4 4 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  10. DeepEyes: Progressive Visual Analytics for Designing Deep Neural Networks

    Pezzotti, N., Hollt, T., van Gemert, J., Lelieveldt, B., Eisemann, E. & Vilanova Bartroli, A., 2018, In : IEEE Transactions on Visualization and Computer Graphics. 24, 1, p. 98-108 11 p., 8019872.

    Research output: Contribution to journalArticleScientificpeer-review

  11. Focus+context exploration of hierarchical embeddings

    Hollt, T., Vilanova, A., Pezzotti, N., Lelieveldt, B. & Hauser, H., 2019, In : Computer Graphics Forum. 38, 3, p. 569-579 11 p.

    Research output: Contribution to journalArticleScientificpeer-review

  12. GPGPU Linear Complexity t-SNE Optimization

    Pezzotti, N., Thijssen, J., Mordvinstev, A., Hollt, T., Van Lew, B., Lelieveldt, B., Eisemann, E. & Vilanova, A., 2020, In : IEEE Transactions on Visualization and Computer Graphics. 26, 1, p. 1172-1181 10 p., 8811606.

    Research output: Contribution to journalArticleScientificpeer-review

  13. Guidelines for the use of flow cytometry and cell sorting in immunological studies (second edition)

    Cossarizza, A., Chang, H-D., Radbruch, A., Acs, A., Adam, D., Hollt, T., Adam-Klages, S. & More Authors, 2019, In : European Journal of Immunology. 49, 10, p. 1457-1973 517 p.

    Research output: Contribution to journalArticleScientificpeer-review

  14. Helminth infections drive heterogeneity in human type 2 and regulatory cells

    de Ruiter, K., Jochems, S. P., Tahapary, D. L., Stam, K. A., König, M., van Unen, V., Höllt, T., Mbow, M., Lelieveldt, B. P. F. & More Authors, 2020, In : Science Translational Medicine. 12, 524, 8 p., eaaw3703.

    Research output: Contribution to journalArticleScientificpeer-review

  15. Heterogeneity of circulating CD8 T-cells specific to islet, neo-antigen and virus in patients with type 1 diabetes mellitus

    Laban, S., Suwandi, J. S., van Unen, V., Pool, J., Wesselius, J., Hollt, T., Pezzotti, N., Vilanova, A., Lelieveldt, B. P. F. & Roep, B. O., 2018, In : PLoS ONE. 13, 8, p. 1-15 15 p., e0200818.

    Research output: Contribution to journalArticleScientificpeer-review

  16. Hierarchical Stochastic Neighbor Embedding

    Pezzotti, N., Hollt, T., Lelieveldt, B. P. F., Eisemann, E. & Vilanova Bartroli, A., 2016, In : Computer Graphics Forum (online). 35, 3, p. 21-30 10 p.

    Research output: Contribution to journalArticleScientificpeer-review

  17. High-dimensional cytometric analysis of colorectal cancer reveals novel mediators of antitumour immunity

    De Vries, N. L., Van Unen, V., Ijsselsteijn, M. E., Abdelaal, T., Van Der Breggen, R., Farina Sarasqueta, A., Mahfouz, A., Peeters, K. C. M. J., Höllt, T., Lelieveldt, B. P. F., Koning, F. & De Miranda, N. F. C. C., 2019, In : Gut. p. 1-13 13 p.

    Research output: Contribution to journalArticleScientificpeer-review

  18. ImaCytE: Visual Exploration of Cellular Microenvironments for Imaging Mass

    van Unen, V., Hollt, T., Koning, F. & Lelieveldt, B., 2020, (Accepted/In press) In : IEEE Transactions on Visualization and Computer Graphics. p. 1-13 13 p.

    Research output: Contribution to journalArticleScientificpeer-review

  19. Interactive Visual Exploration of 3D Mass Spectrometry Imaging Data Using Hierarchical Stochastic Neighbor Embedding Reveals Spatiomolecular Structures at Full Data Resolution

    Abdelmoula, W. M., Pezzotti, N., Hollt, T., Dijkstra, J., Vilanova, A., McDonnell, L. A. & Lelieveldt, B., 2018, In : Journal of Proteome Research. 17, 3, p. 1054-1064 11 p.

    Research output: Contribution to journalArticleScientificpeer-review

  20. Mass Cytometry of the Human Mucosal Immune System Identifies Tissue- and Disease-Associated Immune Subsets

    van Unen, V., Li, N., Molendijk, I., Temurhan, M., Hollt, T., van der Meulen-de Jong, A. E., Verspaget, H. W., Mearin, M. L., Mulder, C. J., van Bergen, J., Lelieveldt, B. P. F. & Koning, F., 2016, In : Immunity. 44, 5, p. 1227-1239 13 p.

    Research output: Contribution to journalArticleScientificpeer-review

  21. Mass cytometry reveals innate lymphoid cell differentiation pathways in the human fetal intestine

    Li, N., van Unen, V., Hollt, T., Thompson, A., van Bergen, J., Pezzotti, N., Eisemann, E., Vilanova, A., Chuva de Sousa Lopes, S. M., Lelieveldt, B. & Koning, F., 2018, In : Journal of Experimental Medicine. 215, 5, p. 1383-1396 14 p.

    Research output: Contribution to journalArticleScientificpeer-review

  22. Memory CD4+ T cells are generated in the human fetal intestine

    Li, N., van Unen, V., Abdelaal, T., Guo, N., Kasatskaya, S. A., Chuva de Sousa Lopes, S. M., Höllt, T., Britanova, O. V., Lelieveldt, B. P. F. & More Authors, 2019, In : Nature Immunology. 20, 3, p. 301-312 12 p.

    Research output: Contribution to journalArticleScientificpeer-review

  23. Multidimensional analyses of proinsulin peptide-specific regulatory T cells induced by tolerogenic dendritic cells

    Suwandi, J. S., Laban, S., Vass, K., Joosten, A., van Unen, V., Lelieveldt, B., Höllt, T., Zwaginga, J. J., Nikolic, T. & Roep, B. O., 2019, In : Journal of Autoimmunity. 107 (2020), p. 1-11 11 p., 102361.

    Research output: Contribution to journalArticleScientificpeer-review

  24. Multiscale Visualization and Exploration of Large Bipartite Graphs

    Pezzotti, N., Fekete, J-D., Hollt, T., Lelieveldt, B., Eisemann, E. & Vilanova, A., 2018, In : Computer Graphics Forum: the international journal of the Eurographics Association. 37, 3, p. 549-560 12 p.

    Research output: Contribution to journalConference articleScientificpeer-review

  25. Overview + Detail Visualization for Ensembles of Diffusion Tensors

    Zhang, C., Caan, M. W. A., Höllt, T., Eisemann, E. & Vilanova, A., 2017, In : Computer Graphics Forum (online). 36, 3, p. 121-132 12 p.

    Research output: Contribution to journalArticleScientificpeer-review

  26. PD-L1 blockade engages tumor-infiltrating lymphocytes to co-express targetable activating and inhibitory receptors

    Beyrend, G., van der Gracht, E., Yilmaz, A., van Duikeren, S., Camps, M., Hollt, T., Vilanova, A., van Unen, V., Koning, F., de Miranda, N. F. C. C., Arens, R. & Ossendorp, F., 2019, In : Journal for ImmunoTherapy of Cancer. 7, 1, p. 1-14 14 p., 217.

    Research output: Contribution to journalArticleScientificpeer-review

  27. Predicting Cell Populations in Single Cell Mass Cytometry Data

    Abdelaal, T., van Unen, V., Höllt, T., Koning, F., Reinders, M. J. T. & Mahfouz, A., 2019, In : Cytometry Part A. 95, 7, p. 769-781 13 p.

    Research output: Contribution to journalArticleScientificpeer-review

  28. The anatomical location shapes the immune infiltrate in tumors of same etiology and affects survival

    Santegoets, S. J., van Ham, V. J., Ehsan, I., Charoentong, P., Duurland, C. L., van Unen, V., Hollt, T., van der Velden, L. A., van der Burg, S. H. & More Authors, 2019, In : Clinical Cancer Research. 25, 1, p. 240-252 13 p.

    Research output: Contribution to journalArticleScientificpeer-review

  29. The contribution of cytomegalovirus infection to immune senescence is set by the infectious dose

    Redeker, A., Remmerswaal, E. B. M., van der Gracht, E. T. I., Welten, S. P. M., Hollt, T., Koning, F., Cicin-Sain, L., Nikolich-Žugich, J., ten Berge, I. J. M., van Lier, R. A. W., van Unen, V. & Arens, R., 2018, In : Frontiers in Immunology. 8, p. 1-15 15 p.

    Research output: Contribution to journalArticleScientificpeer-review

  30. Visual Analysis of Reservoir Simulation Ensembles

    Hollt, T., de Matos Ravanelli, F. M., Hadwiger, M. & Hoteit, I., 2016, Workshop on Visualisation in Environmental Sciences (EnvirVis 2016). Middel, A., Rink, K. & Zeckzer, D. (eds.). The Eurographics Association, p. 1-4 4 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  31. Visual analysis of mass cytometry data by hierarchical stochastic neighbour embedding reveals rare cell types

    van Unen, V., Höllt, T., Pezzotti, N., Li, N., Reinders, M. J. T., Eisemann, E., Koning, F., Vilanova, A. & Lelieveldt, B. P. F., 2017, In : Nature Communications. 8, p. 1-10 10 p., 1740.

    Research output: Contribution to journalArticleScientificpeer-review

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