1. Comprehensive visualization of multi-modal cardiac imaging data for assessment of coronary artery disease: first clinical results of the SMARTVis tool

    Kirisli, HA., Gupta, V., Kirschbaum, SW., Rossi, A., Metz, CT., Schaap, M., Geuns, RJ., Mollet, N., Lelieveldt, BPF., Reiber, JHC., van Walsum, T. & Niessen, WJ., 2012, In : International Journal of Computer Assisted Radiology and Surgery. 7, 4, p. 557-571 15 p.

    Research output: Contribution to journalArticleScientificpeer-review

  2. Concurrent white and gray matter degeneration of disease-specific networks in early-stage Alzheimer's disease and behavioral variant frontotemporal dementia

    Steketee, R. M. E., Meijboom, R., de Groot, M., Bron, E. E., Niessen, W. J., van der Lugt, A., van Swieten, J. C. & Smits, M., 2016, In : Neurobiology of Aging: age-related phenomena, neurodegeneration and neuropathology. 43, p. 119-128

    Research output: Contribution to journalArticleScientificpeer-review

  3. Conditional Shape Models for Cardiac Motion Estimation

    Metz, CT., Baka, N., Kirisli, HA., Schaap, MA., van Walsum, T., Klein, S., Neefjes, L., Mollet, NRA., Lelieveldt, BPF., Bruijne, M. & Niessen, WJ., 2010, In : Lecture Notes in Computer Science. 6361, p. 452-459 8 p.

    Research output: Contribution to journalArticleScientificpeer-review

  4. Confidence of model based shape reconstruction from sparse data

    Baka, N., Bruijne, M., Reiber, JHC., Niessen, WJ. & Lelieveldt, BPF., 2010, Proceedings of the 2010 IEEE International Symposium on Biomedical Imaging: From Nano to Macro. Meijering et al, E. & Niessen, W. (eds.). Piscataway, NJ, USA: IEEE Society, p. 1077-1080 4 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  5. Conory lumen segmentation using graph cuts and robust kernel regression

    Schaap, M., Neefjes, L., Metz, CT., van der Giessen, AG., Weustink, AC., Mollet, NRA., Wentzel, JJ., van Walsum, T. & Niessen, WJ., 2009, In : Lecture Notes in Computer Science. 5636, p. 528-539 12 p.

    Research output: Contribution to journalArticleScientificpeer-review

  6. Continuous roadmapping in liver TACE procedures using 2D¿3D catheter-based registration

    Ambrosini, P., Ruijters, D., Niessen, WJ., Moelker, A. & van Walsum, T., 2015, In : International Journal of Computer Assisted Radiology and Surgery (online). 10, 9, p. 1357-1370 14 p.

    Research output: Contribution to journalArticleScientificpeer-review

  7. Contour segmentation of the intima, media, and adventitia layers in intracoronary OCT images: application to fully automatic detection of healthy wall regions

    Zahnd, G., Hoogendoorn, A., Combaret, N., Karanasos, A., Péry, E., Sarry, L., Motreff, P., Niessen, W., Regar, E., van Soest, G., Gijsen, F. & van Walsum, T., 2017, In : International Journal of Computer Assisted Radiology and Surgery. 12, 11, p. 1923-1936

    Research output: Contribution to journalArticleScientificpeer-review

  8. Contrast-enhancement influences skeletal muscle density, but not skeletal muscle mass, measurements on computed tomography

    van Vugt, J. L. A., Coebergh van den Braak, R. R. J., Schippers, H. J. W., Veen, K. M., Levolger, S., de Bruin, R. W. F., Koek, M., Niessen, W. J., IJzermans, J. N. M. & Willemsen, F. E. J. A., 2018, In : Clinical Nutrition. 37, 5, p. 1707-1714

    Research output: Contribution to journalArticleScientificpeer-review

  9. Coronary centerline extraction form CT coronary angiography images using a minimum cost path approach

    Metz, CT., Schaap, M., Weustink, AC., Mollet, NRA., van Walsum, T. & Niessen, WJ., 2009, In : Medical Physics. 36, 12, p. 5568-5579 12 p.

    Research output: Contribution to journalArticleScientificpeer-review

  10. Correspondence free 3D statistical shape model fitting to sparse X-ray projections

    Baka, N., Niessen, WJ., Kaptein, BL., van Walsum, T., Ferarrini, L., Reiber, JHC. & Lelieveldt, BPF., 2010, Medical Imaging 2010: Image processing. Haynor, DR. & Dawant, BM. (eds.). Bellingham, WA, USA: SPIE, p. 1-9 9 p. (Proceedings of SPIE- International Society for Optical Engineering; vol. 7623).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  11. Cortical abnormalities in adults and adolescents with major depression based on brain scans from 20 cohorts worldwide in the ENIGMA Major Depressive Disorder Working Group

    Schmaal, L., Hibar, D. P., Sämann, P. G., Hall, G. B., Baune, B. T., Jahanshad, N., Cheung, J. W., Van Erp, T. G. M., Bos, D., Ikram, M. A., Vernooij, M. W., Niessen, W. J., Tiemeier, H., Hofman, A., Wittfeld, K., Grabe, H. J., Janowitz, D., Bülow, R., Selonke, M., Völzke, H. & 61 othersGrotegerd, D., Dannlowski, U., Arolt, V., Opel, N., Heindel, W., Kugel, H., Hoehn, D., Czisch, M., Couvy-Duchesne, B., Rentería, M. E., Strike, L. T., Wright, M. J., Mills, N. T., De Zubicaray, G. I., McMahon, K. L., Medland, S. E., Martin, N. G., Gillespie, N. A., Goya-Maldonado, R., Gruber, O., Krämer, B., Hatton, S. N., Lagopoulos, J., Hickie, I. B., Frodl, T., Carballedo, A., Frey, E. M., Van Velzen, L. S., Penninx, B. W. J. H., Van Tol, M. J., Van Der Wee, N. J., Davey, C. G., Harrison, B. J., Mwangi, B., Cao, B., Soares, J. C., Veer, I. M., Walter, H., Schoepf, D., Zurowski, B., Konrad, C., Schramm, E., Normann, C., Schnell, K., Sacchet, M. D., Gotlib, I. H., MacQueen, G. M., Godlewska, B. R., Nickson, T., McIntosh, A. M., Papmeyer, M., Whalley, H. C., Hall, J., Sussmann, J. E., Li, M., Walter, MT., Aftanas, L., Brack, I., Bokhan, N. A., Thompson, P. M. & Veltman, D. J., 1 Jun 2017, In : Molecular Psychiatry. 22, 6, p. 900-909 10 p.

    Research output: Contribution to journalArticleScientificpeer-review

  12. Design issues of the existing radiotherapy segmentation software

    Ramkumar, A., Song, Y., Niessen, W. & Stappers, P. J., 2016, In : International Symposium of Human Factors and Ergonomics in Healthcare. Proceedings. 5, 1, p. 1-8 8 p.

    Research output: Contribution to journalArticleScientificpeer-review

  13. Design of the ExCersion-VCI study: The effect of aerobic exercise on cerebral perfusion in patients with vascular cognitive impairment

    Leeuwis, A. E., Hooghiemstra, A. M., Amier, R., Ferro, D. A., Franken, L., Nijveldt, R., Kuijer, J. P. A., Bronzwaer, A. S. G. T., van Lieshout, J. J., Rietberg, M. B., Veerbeek, J. M., Huijsmans, R. J., Backx, F. J. G., Teunissen, C. E., Bron, E. E., Barkhof, F., Prins, N. D., Shahzad, R., Niessen, W. J., de Roos, A. & 4 othersvan Osch, M. J. P., van Rossum, A. C., Biessels, G. J. & van der Flier, W. M., 2017, In : Alzheimer's and Dementia: Translational Research and Clinical Interventions. 3, 2, p. 157-165

    Research output: Contribution to journalArticleScientificpeer-review

  14. Detection of mild cognitive impairment in a community-dwelling population using quantitative, multiparametric MRI-based classification

    Bouts, M. J. R. J., van der Grond, J., Vernooij, M. W., Koini, M., Schouten, T. M., de Vos, F., Feis, R. A., Lechner, A., Niessen, W. J. & More Authors, 2019, In : Human Brain Mapping. 40, 9, p. 2711-2722 12 p.

    Research output: Contribution to journalArticleScientificpeer-review

  15. Determinants of carotid atherosclerotic plaque burden in a stroke-free population

    Selwaness, M., Hameeteman, R., Van 't Klooster, R., Van den Bouwhuijsen, Q., Hofman, A., Franco, O. H., Niessen, W. J., Klein, S., Vernooij, M. W., Van der Lugt, A. & Wentzel, J. J., 1 Dec 2016, In : Atherosclerosis. 255, p. 186-192 7 p.

    Research output: Contribution to journalArticleScientificpeer-review

  16. Developing a tool for the validation of quantitative DCE-MRI

    Bol, K., Haeck, JC., Alic, L., Bernsen, MR., de Jong, M., Veenland, JF. & Niessen, WJ., 2011, In : Proceedings of SPIE- International Society for Optical Engineering. 7965, p. 1-4 4 p.

    Research output: Contribution to journalConference articleScientificpeer-review

  17. Development and validation of intracranial thrombus segmentation on CT angiography in patients with acute ischemic stroke

    Santos, EMM., Marquering, HA., Berkhemer, OA., van der Zwam, W., van der Lugt, A., Majoie, CBLM. & Niessen, WJ., 2014, In : PLoS ONE. 9, 7, p. 1-8 8 p.

    Research output: Contribution to journalArticleScientificpeer-review

  18. Diagnostic classification of arterial spin labeling and structural MRI in presenile early-stage dementia

    Bron, EE., Steketee, RME., Houston, G., Oliver, RA., Achterberg, HC., Loog, M., van Swieten, JC., Hammers, A., Niessen, WJ., Smits, M. & Klein, S., 2014, In : Human Brain Mapping. 35, p. 4916-4931 16 p.

    Research output: Contribution to journalArticleScientificpeer-review

  19. Differential patterns of age-related cortical and subcortical functional connectivity in 6-to-10 year old children: A connectome-wide association study

    Langen, C. D., Muetzel, R., Blanken, L., van der Lugt, A., Tiemeier, H., Verhulst, F., Niessen, W. J. & White, T., 2018, In : Brain and Behavior. 8, 8, 15 p., e01031.

    Research output: Contribution to journalArticleScientificpeer-review

  20. Disconnection due to white matter hyperintensities is associated with lower cognitive scores

    Langen, C. D., Cremers, L. G. M., de Groot, M., White, T., Ikram, M. A., Niessen, W. J. & Vernooij, M. W., 2018, In : NeuroImage. 183, p. 745-756

    Research output: Contribution to journalArticleScientificpeer-review

  21. Disease progression timeline estimation for Alzheimer's disease using discriminative event based modeling

    Venkatraghavan, V., Bron, E. E., Niessen, W. J. & Klein, S., 2019, In : NeuroImage. 186, p. 518-532

    Research output: Contribution to journalArticleScientificpeer-review

  22. Do volume, height and width of the eye determine refractive error? Results from 10-year-old European children from the Generation R Study.

    Tideman, W., Marstal, K., Polling, J. R., Jaddoe, V., Vernooij, M., van der Lugt, A., Niessen, W., Poot, D. & Klaver, C. C. W., 2018, In : Investigative Ophthalmology & Visual Science. 59, 9

    Research output: Contribution to journalMeeting AbstractScientific

  23. Early diagnosis of dementia based on intersubject whole-brain dissimilarities

    Klein, S., Loog, M., van der Lijn, F., den Heijer, T., Hammers, A., Bruijne, M., van der Lugt, A., Duin, RPW., Breteler, MMB. & Niessen, WJ., 2010, Proceedings of the 2010 IEEE International Symposium on Biomedical Imaging: From Nano to Macro. S.N. (ed.). Piscataway, NJ USA: IEEE Society, p. 249-252 4 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  24. Efficient projection model for blobs in motion-compensated iterative cone-beam CT

    Isola, AA., Ziegler, A., Kohler, T. & Niessen, WJ., 2009, IEEE Nuclear Science Symposium / Medical Imaging Conference. s.n. (ed.). s.n., p. 3405-3412 8 p. (IEEE Nuclear Science Symposium - Conference Record; vol. 1-9).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  25. End-to-end diagnosis and segmentation learning from cardiac magnetic resonance imaging

    Snaauw, G., Gong, D., Maicas, G., van den Hengel, A., Niessen, W., Verjans, J. & Carneiro, G., 2018, ISBI 2019 - 2019 IEEE International Symposium on Biomedical Imaging. IEEE, p. 802-805 4 p. 8759276

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  26. Energy minimazation methods for cell motion correction and intracellular analysis in live-cell fluorescence microscopy

    Dzyubachyk, O., van Cappellen, WA., Essers, J., Niessen, WJ. & Meijering, E., 2009, IEEE International Symposium on Biomedical Imaging: From Nano to Macro - ISBI. s.n. (ed.). s.n., p. 1127-1130 4 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  27. Enlarged perivascular spaces in brain MRI: Automated quantification in four regions

    Dubost, F., Yilmaz, P., Adams, H., Bortsova, G., Ikram, M. A., Niessen, W., Vernooij, M. & de Bruijne, M., 2019, In : NeuroImage. 185, p. 534-544

    Research output: Contribution to journalArticleScientificpeer-review

  28. Ensemble landmarking of 3D facial surface scans

    De Jong, M. A., Hysi, P., Spector, T., Niessen, W., Koudstaal, M. J., Wolvius, E. B., Kayser, M. & Böhringer, S., 8 Jan 2018, In : Scientific Reports. 8, 1, 12.

    Research output: Contribution to journalArticleScientificpeer-review

  29. Epicardial fat volume is related to atherosclerotic calcification in multiple vessel beds

    Bos, D., Shahzad, R., van Walsum, T., van Vliet, LJ., Franco, OH., Hofman, A., Niessen, WJ., Vernooij, MW. & van der Lugt, A., 2015, In : European Heart Journal - Cardiovascular Imaging. 16, 11, p. 1264-1269 6 p.

    Research output: Contribution to journalArticleScientificpeer-review

  30. Erratum: An automatic registration method for pre- and post-interventional CT images for assessing treatment success in liver RFA treatment (Medical Physics (2015) 42 (5559-5567))

    Luu, H. M., Klink, C., Niessen, W., Moelker, A. & Van Walsum, T., 2015, In : Medical Physics. 42, 12, 1 p.

    Research output: Contribution to journalComment/Letter to the editorScientificpeer-review

  31. Estimating 3D lumen centerlines of carotid arteries in free-hand acquisition ultrasound

    Carvalho, DDB., Klein, S., Akkus, Z., ten Kate, GL., Schinkel, AFL., Bosch, JG., van der Lugt, A. & Niessen, WJ., 2011, In : International Journal of Computer Assisted Radiology and Surgery. p. 1-9 9 p.

    Research output: Contribution to journalArticleScientificpeer-review

  32. Estimating 3D lumen centerlines of carotid arteries in free-hand acquisition ultrasound

    Carvalho, DDB., Klein, S., Akkus, Z., ten Kate, GL., Schinkel, AFL., Bosch, JG., van der Lugt, A. & Niessen, WJ., 2012, In : International Journal of Computer Assisted Radiology and Surgery. 7, 2, p. 207-215 9 p.

    Research output: Contribution to journalArticleScientificpeer-review

  33. Evaluation framework for carotid bifurcation lumen segmentation and stenosis grading

    Hameeteman, K., Zuluaga, MA., Freiman, M., Joiskowicz, L., Cuisenaire, O., Florez Valencia, L., Gulsun, MA., Krissian, K., Mille, J., Wong, WCK., Orkisz, M., Tek, H., Hernandez Hoyos, M., Benmansour, F., Chung, ACS., Rozie, S., van Gils, MJ., van der Borne, L., Sosna, J., Berman, P. & 10 othersCohen, N., Douek, P., Sanchez, I., Aissat, M., Schaap, M., Metz, C., Krestin, GP., van der Lugt, A., Niessen, WJ. & van Walsum, T., 2011, In : Medical Image Analysis. 8, p. 477-488 12 p.

    Research output: Contribution to journalArticleScientificpeer-review

  34. Evaluation of 2D and 3D ultrasound tracking algorithms and impact on ultrasound-guided liver radiotherapy margins

    De Luca, V., Banerjee, J., Hallack, A., Kondo, S., Makhinya, M., Nouri, D., Royer, L., Cifor, A., Niessen, W. J., van Walsum, T. & More Authors, 2018, In : Medical Physics. 45, 11, p. 4986 5003 p.

    Research output: Contribution to journalArticleScientificpeer-review

  35. Evaluation of a multi-atlas based method for segmentation of cardiac CTA data: a large-scale, multi-center and multi-vendor study

    Kirisli, HA., Schaap, M., Klein, S., Papadopoulou, SL., Bonardi, ML., Chen, CH., Weustink, AC., Mollet, NRA., Vonken, E. P. A., van der Geest, R. J., van Walsum, T. & Niessen, WJ., 2010, In : Medical Physics. 37, p. 6279-6292 14 p.

    Research output: Contribution to journalArticleScientificpeer-review

  36. Event-Based Modeling with High-Dimensional Imaging Biomarkers for Estimating Spatial Progression of Dementia

    Venkatraghavan, V., Dubost, F., Bron, E. E., Niessen, W. J., de Bruijne, M. & Klein, S., 2019, Information Processing in Medical Imaging - 26th International Conference, IPMI 2019, Proceedings. Chung, A. C. S., Gee, J. C., Yushkevich, P. A. & Bao, S. (eds.). Springer Verlag, p. 169-180 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11492 LNCS).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  37. Exome Chip Analysis Identifies Low-Frequency and Rare Variants in MRPL38 for White Matter Hyperintensities on Brain Magnetic Resonance Imaging

    Jian, X., Satizabal, C. L., Smith, A. V., Wittfeld, K., Bis, J. C., Hsu, F-C., Nho, K., Li, S., Niessen, W. J. & More Authors, 2018, In : Stroke. 49, 8, p. 1812-1819

    Research output: Contribution to journalArticleScientificpeer-review

  38. Exome-sequencing in a large population-based study reveals a rare Asn396Ser variant in the LIPG gene associated with depressive symptoms

    Amin, N., Jovanova, O., Adams, H., Dehghan, A., Kavousi, M., Vernooij, M. W., Peeters, R. P., De Vrij, F. M. S., Van Der Lee, S. J., Van Rooij, J. G. J., Van Leeuwen, E. M., Chaker, L., Demirkan, A., Hofman, A., Brouwer, R. W. W., Kraaij, R., Willems Van DIjk, K., Hankemeier, T., Van Ijcken, W. F. J., Uitterlinden, A. G. & 6 othersNiessen, W. J., Franco, O. H., Kushner, S. A., Ikram, M. A., Tiemeier, H. & Van Duijn, C. M., 1 Apr 2017, In : Molecular Psychiatry. 22, 4, p. 537-543 7 p.

    Research output: Contribution to journalArticleScientificpeer-review

  39. Facilitating Tumor Functional Assessment by Spatially Relating 3D Tumor Histology and In Vivo MRI: Image Registration Approach

    Alic, L., Haeck, JC., Bol, K., Klein, S., van Tiel, ST., Wielepolski, PA., de Jong, M., Niessen, WJ., Bernsen, MR. & Veenland, JF., 2011, In : PLoS ONE. 6, 8

    Research output: Contribution to journalArticleScientificpeer-review

  40. Fast en robust 3D ultrasound registration - block and game theoretic matching

    Banerjee, J., Klink, SJC., Peters, ED., Niessen, WJ., Moelker, A. & van Walsum, T., 2015, In : Medical Image Analysis. 20, 1, p. 173-183 11 p.

    Research output: Contribution to journalArticleScientificpeer-review

  41. Fast noise reduction in computed tomography for improved 3-D visualization

    Schaap, M., Schilham, AM., Zuiderveld, KJ., Prokop, M., Vonken, EJ. & Niessen, WJ., 2008, In : IEEE Transactions on Medical Imaging. 27, 8, p. 1120-1129 10 p.

    Research output: Contribution to journalArticleScientificpeer-review

  42. Fastr: a work flow engine for advanced data flows

    Achterberg, HC., Koek, M. & Niessen, WJ., 2015, Proceedings of the 1st MICCAI Workshop on Management and Processing of Images for Population Imaging. Barillot, C., Dojat, M., Kennedy, D. & Niessen, WJ. (eds.). s.l.: s.n., p. 39-46 8 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  43. Feasibility of multi-modal deformable registration for head and neck tumor treatment planning

    Fortunati, VF., Verhaart, RF., Angeloni, F., van der Lugt, A., Niessen, WJ., Veenland, JF., Paulides, M. & van Walsum, T., 2014, In : International Journal of Radiation: Oncology - Biology - Physics. 90, p. 85-93 9 p.

    Research output: Contribution to journalArticleScientificpeer-review

  44. Feature selection based on the SVM weight vector for classification of dementia

    Bron, EE., Smits, M., Niessen, WJ. & Klein, S., 2015, In : IEEE Journal of Biomedical and Health Informatics. 19, 5, p. 1617-1626 10 p.

    Research output: Contribution to journalArticleScientificpeer-review

  45. Fine-mapping the effects of Alzheimer's disease risk loci on brain morphology

    Roshchupkin, G. V., Adams, H. H., van der Lee, S. J., Vernooij, M. W., van Duijn, C. M., Uitterlinden, A. G., van der Lugt, A., Hofman, A., Niessen, W. J. & Ikram, M. A., 1 Dec 2016, In : Neurobiology of Aging: age-related phenomena, neurodegeneration and neuropathology. 48, p. 204-211 8 p.

    Research output: Contribution to journalArticleScientificpeer-review

  46. Free-form deformation using lower-order B-spline for nonrigid image registration

    Sun, W., Niessen, WJ. & Klein, S., 2014, In : Lecture Notes in Computer Science. 8673, PART 1, p. 194-201 8 p.

    Research output: Contribution to journalArticleScientificpeer-review

  47. Free-form deformation using lower-order B-spline for nonrigid image registration.

    Sun, W., Niessen, WJ. & Klein, S., 2014, MICCAI 2014, LNCS 8637, PART1. Golland, P. & et al (eds.). Zwitserland: Springer, p. 194-201 8 p.

    Research output: Chapter in Book/Report/Conference proceedingChapterScientific

  48. Full exploitation of high dimensionality in brain imaging: The JPND working group statement and findings

    Adams, H. H. H., Roshchupkin, G. V., DeCarli, C., Franke, B., Grabe, H. J., Habes, M., Jahanshad, N., Medland, S. E., Niessen, W. & More Authors, 2019, In : Alzheimer's and Dementia: Diagnosis, Assessment and Disease Monitoring. 11, p. 286-290 5 p.

    Research output: Contribution to journalArticleScientificpeer-review

  49. Fully automated carotid plaque segmentation in combined contrast enhanced and B-mode ultrasound

    Akkus, Z., Carvalho, DDB., van den Oord, SCH., Schinkel, AFL., Niessen, WJ., de Jong, N., van der Steen, AFW., Klein, S. & Bosch, JG., 2015, In : Ultrasound in Medicine & Biology. 41, 2, p. 517-531 15 p.

    Research output: Contribution to journalArticleScientificpeer-review

  50. Fully automatic and real-time catheter segmentation in X-ray fluoroscopy

    Ambrosini, P., Ruijters, D., Niessen, W. J., Moelker, A. & van Walsum, T., 2017, Medical Image Computing and Computer Assisted Intervention − MICCAI 2017 - 20th International Conference, Proceedings. Springer Verlag, Vol. 10434 LNCS. p. 577-585 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10434 LNCS).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

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