1. Conference contribution › Scientific › Peer-reviewed
  2. A discriminative event based model for Alzheimer’s disease progression modeling

    Venkatraghavan, V., Bron, E. E., Niessen, W. J. & Klein, S., 2017, Proceedings of 25th International Conference, IPMI 2017. Springer, Vol. 10265 LNCS. p. 121-133 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10265 LNCS).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  3. A patient-specific coronary artery density estimate

    Shahzad, R., Schaap, MA., van Walsum, T., Klein, S., Weustink, AC., van Vliet, LJ. & Niessen, WJ., 2010, Proc. 2010 IEEE International Symposium on Biomedical Imaging: From Nano to Macro. s.n. (ed.). s.n.: s.n., p. 9-12 4 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  4. Accurate estimation of microtubule dynamics using kymographs and variable-rate particle filters

    Smal, I., Grigoriev, I., Akhmanova, A., Niessen, WJ. & Meijering, E., 2009, Annual International Conference of the IEEE Engineering in Medicine and Biology Society - EMBC. s.n. (ed.). s.n., p. 1-4 4 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  5. Advanced Particle Filtering for Multiple Object Tracking in Dynamic Fluorescence Microscopy Images

    Smal, I., Niessen, WJ. & Meijering, E., 2007, IEEE International Symposium on Biomedical Imaging: From Nano to Macro. s.n. (ed.). s.n.: IEEE Society, p. 1048-1051 4 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  6. Alignment of 4D Coronary CTA with Monoplane X-Ray Angiography

    Metz, C., Schaap, M., Klein, S., Rijnbeek, P., Neefjes, L., Mollet, N., Schultz, C., Serruys, P., Niessen, WJ. & van Walsum, T., 2011, MICCAI workshop: Augmented Environments for Computer Assisted Interventions. sn (ed.). Springer, p. 1-9 9 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  7. Automactic segmentation of brain tissue and white matter lesions in MRI

    Boer, R., van der Lijn, F., Vrooman, HA., Vernooij, M. W., Ikram, MA., Breteler, MMB. & Niessen, WJ., 2007, 4th IEEE Int. Symposium on Biomedical Imaging: From Nano to Macro. s.n. (ed.). IEEE Society, p. 652-655 4 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  8. Automated Estimation of the Spinal Curvature via Spine Centerline Extraction with Ensembles of Cascaded Neural Networks

    Dubost, F., Collery, B., Renaudier, A., Roc, A., Posocco, N., Niessen, W. & de Bruijne, M., 2020, Computational Methods and Clinical Applications for Spine Imaging - 6th International Workshop and Challenge, CSI 2019, Proceedings. Cai, Y., Wang, L., Audette, M., Zheng, G. & Li, S. (eds.). Springer Open, p. 88-94 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11963 LNCS).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  9. Automated Quantification of Enlarged Perivascular Spaces in Clinical Brain MRI across Sites

    Dubost, F., Dünnwald, M., Huff, D., Scheurmann, V., Schreiber, F., Vernooij, M. W., Niessen, W., Skalej, M., Schreiber, S. & More Authors, 2019, Proceedings of 2nd International Workshop on Context-Aware Surgical Theaters,OR 2.0 Context-Aware Operating Theaters and Machine Learning in Clinical Neuroimaging, MLCN 2019. Zhou, L., Sarikaya, D., Kia, S. M., Speidel, S., Malpani, A., Hashimoto, D., Habes, M., Löfstedt, T., Ritter, K. & Wang, H. (eds.). Springer, p. 103-111 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11796 LNCS).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  10. Automatic Classification of Calcification in the Coronary Vessel Tree

    Shazhad, R., van Vliet, LJ., Niessen, WJ. & van Walsum, T., 2014, MICCAI Challenge on Automated Coronary Artery Scoring, orCAScore 2014. s.n. (ed.). MICCAI, p. 14-21 8 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  11. Automatic detection of calcified lesions in the descending aorta using contrast enhanced CT scans

    Shahzad, R., Schaap, M., Goncalves, FB., Metz, C., Tang, H., van Walsum, T., Moelker, A., van Vliet, LJ. & Niessen, WJ., 2012, 9th IEEE International Symposium on Biomedical Imaging (ISBI). sn (ed.). Barcelona: s.n., p. 250-253 4 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  12. Averaged stochastic optimization for medical image registration based on variance reduction

    Sun, W., Poot, D. H. J., Yang, X., Niessen, W. J. & Klein, S., 1 Jan 2018, Biomedical Image Registration - 8th International Workshop, WBIR 2018, Proceedings. Klein, S., Sommer, S., Durrleman, S. & Staring, M. (eds.). Springer, Vol. 10883 LNCS. p. 69-79 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10883 LNCS).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  13. Bayesian Tracking for Fluorescence Microscopic Imaging

    Smal, I., Niessen, WJ. & Meijering, E., 2006, From Nano to Macro. Christensen, G., Coatrieux, JL., Fessler, J., Kovacevic, J., Liang, ZP., Meijering, E., Moura, J., Murphy, B., Niessen, W., Roux, C., Unser, M. & Wilson, D. (eds.). Piscataway: IEEE Society, p. 550-553 4 p. (International Symposium on Biomedical Imaging. Proceedings; vol. 4).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  14. Cardiac-Motion Correction for Helical CT

    Isola, AA., van Stevendaal, U., Schaefer, D., Niessen, WJ. & Grass, M., 2010, 2009 IEEE Nuclear Science Symposium Conference Record. s.n. (ed.). s.n., p. 3247-3250 4 p. (IEEE Conference Record - Nuclear Science Symposium & Medical Imaging Conference; vol. 1-5).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  15. Carotid artery segmentation and plaque quantification in CTA

    Vukadinovic, D., van Walsum, T., Rozie, S., de Weert, TT., Manniesing, R., van der Lugt, A. & Niessen, WJ., 2009, IEEE International Symposium on Biomedical Imaging 1+2. s.n. (ed.). IEEE Society, p. 835-838 4 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  16. Carotid artery wall segmentation by coupled surface graph cuts

    Arias, A., Petersen, J., van Engelen, A., Tang, H., Selwaness, M., Witteman, JCM., van der Lugt, A., Niessen, WJ. & Bruijne, M. D., 2013, Lecture Notes in Computer Science. s.n. (ed.). Berlin: Springer, p. 38-47 10 p. (Lecture Notes in Computer Science; vol. 7766).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  17. Cerebellum segmentation in MRI using atlas registration and local multi-scale image descriptors

    van der Lijn, F., Bruijne, M., Hoogendam, YY., Klein, S., Hameeteman, K., Breteler, MMB. & Niessen, WJ., 2009, Proceedings of IEEE International Symposium on Biomedical Imaging: Macro to Nano. s.n. (ed.). s.n., p. 221-224 4 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  18. Classification of malignant and benign liver tumors using a radiomics approach

    Starmans, M. P. A., Miclea, R. L., Van Der Voort, S. R., Niessen, W. J., Thomeer, M. G. & Klein, S., 2018, Medical Imaging 2018: Image Processing. SPIE, Vol. 10574. 105741D

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  19. Combining graph cuts, atlas registration, and voxel classification for hippocampus segmentation in MR images

    van der Lijn, F., den Heijer, T., Breteler, MMB. & Niessen, WJ., 2007, Mathematical methods in biomedical image analysis- IN PRESS. Nielsen, M., Niessen, WJ. & Westin, CF. (eds.). IEEE Society, p. 1-5 5 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  20. Confidence of model based shape reconstruction from sparse data

    Baka, N., Bruijne, M., Reiber, JHC., Niessen, WJ. & Lelieveldt, BPF., 2010, Proceedings of the 2010 IEEE International Symposium on Biomedical Imaging: From Nano to Macro. Meijering et al, E. & Niessen, W. (eds.). Piscataway, NJ, USA: IEEE Society, p. 1077-1080 4 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  21. Correspondence free 3D statistical shape model fitting to sparse X-ray projections

    Baka, N., Niessen, WJ., Kaptein, BL., van Walsum, T., Ferarrini, L., Reiber, JHC. & Lelieveldt, BPF., 2010, Medical Imaging 2010: Image processing. Haynor, DR. & Dawant, BM. (eds.). Bellingham, WA, USA: SPIE, p. 1-9 9 p. (Proceedings of SPIE- International Society for Optical Engineering; vol. 7623).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  22. Early diagnosis of dementia based on intersubject whole-brain dissimilarities

    Klein, S., Loog, M., van der Lijn, F., den Heijer, T., Hammers, A., Bruijne, M., van der Lugt, A., Duin, RPW., Breteler, MMB. & Niessen, WJ., 2010, Proceedings of the 2010 IEEE International Symposium on Biomedical Imaging: From Nano to Macro. S.N. (ed.). Piscataway, NJ USA: IEEE Society, p. 249-252 4 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  23. Efficient projection model for blobs in motion-compensated iterative cone-beam CT

    Isola, AA., Ziegler, A., Kohler, T. & Niessen, WJ., 2009, IEEE Nuclear Science Symposium / Medical Imaging Conference. s.n. (ed.). s.n., p. 3405-3412 8 p. (IEEE Nuclear Science Symposium - Conference Record; vol. 1-9).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  24. End-to-end diagnosis and segmentation learning from cardiac magnetic resonance imaging

    Snaauw, G., Gong, D., Maicas, G., van den Hengel, A., Niessen, W., Verjans, J. & Carneiro, G., 2018, ISBI 2019 - 2019 IEEE International Symposium on Biomedical Imaging. IEEE, p. 802-805 4 p. 8759276

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  25. Energy minimazation methods for cell motion correction and intracellular analysis in live-cell fluorescence microscopy

    Dzyubachyk, O., van Cappellen, WA., Essers, J., Niessen, WJ. & Meijering, E., 2009, IEEE International Symposium on Biomedical Imaging: From Nano to Macro - ISBI. s.n. (ed.). s.n., p. 1127-1130 4 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  26. Event-Based Modeling with High-Dimensional Imaging Biomarkers for Estimating Spatial Progression of Dementia

    Venkatraghavan, V., Dubost, F., Bron, E. E., Niessen, W. J., de Bruijne, M. & Klein, S., 2019, Information Processing in Medical Imaging - 26th International Conference, IPMI 2019, Proceedings. Chung, A. C. S., Gee, J. C., Yushkevich, P. A. & Bao, S. (eds.). Springer, Vol. 11492. p. 169-180 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11492 LNCS).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  27. Fastr: a work flow engine for advanced data flows

    Achterberg, HC., Koek, M. & Niessen, WJ., 2015, Proceedings of the 1st MICCAI Workshop on Management and Processing of Images for Population Imaging. Barillot, C., Dojat, M., Kennedy, D. & Niessen, WJ. (eds.). s.l.: s.n., p. 39-46 8 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  28. Fully automatic and real-time catheter segmentation in X-ray fluoroscopy

    Ambrosini, P., Ruijters, D., Niessen, W. J., Moelker, A. & van Walsum, T., 2017, Medical Image Computing and Computer Assisted Intervention − MICCAI 2017 - 20th International Conference, Proceedings. Springer, Vol. 10434 LNCS. p. 577-585 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10434 LNCS).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  29. Fully automatic cardiac segmentation from 3D CTA data: a multiatlas based approach

    Kirisli, HA., Schaap, MA., Klein, S., Neefjes, L., Weustink, AC., van Walsum, T. & Niessen, WJ., 2010, Proc. SPIE. Dawant, BM. & Haynor, DR. (eds.). s.n.: s.n., p. 1-9 9 p. (Proceedings of SPIE- International Society for Optical Engineering; vol. 7623).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  30. GPU accelerated alignment of 3-D CTA with 2-D X-ray data for improved guidance in coronary interventions

    Metz, CT., Schaap, M., Klein, S., Weustink, AC., Mollet, NRA., Schulz, C., Geuns, RJ., Serruys, PW. & Niessen, WJ., 2009, Proceedings of IEEE International Symposium on Biomedical Imaging: Macro to Nano, 2009. s.n. (ed.). s.n., p. 959-962 4 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  31. Gp-Unet: Lesion detection from weak labels with a 3D regression network

    Dubost, F., Bortsova, G., Adams, H. H., Ikram, M. A., Niessen, W. J., Vernooij, M. W. & de Bruijne, M., 2017, Medical Image Computing and Computer Assisted Intervention − MICCAI 2017 - 20th International Conference, Proceedings. Descoteaux, M. (ed.). Springer, Vol. 10435 LNCS. p. 214-221 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10435 LNCS).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  32. Groupwise image registration of multimodal head-and-neck images

    Guyader, J-M., Huizinga, W., Fortunati, V., Veenland, JF., Paulides, MM., Niessen, WJ. & Klein, S., 2015, Proceedings of the 12th IEEE International Symposium on Biomedical Imaging. Kova¿evi¿, J. & Angelini, E. (eds.). Piscataway: IEEE Society, p. 730-733 4 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  33. Heritability of connectivity and disconnectivity of the brain in a population-based study

    Langen, C. D., Roshchupkin, G., Adams, H. H., De Groot, M., Vos, F., Vernooij, M. W., Ikram, M. A. & Niessen, W. J., 15 Jun 2017, Proceedings of IEEE 14th International Symposium on Biomedical Imaging, ISBI 2017. IEEE, p. 349-353 5 p. 7950535

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  34. Human computer interaction in segmenting organs at risk for radiotherapy: A pilot study

    Ramkumar, A., Dolz, J., Kirisli, HA., Varga, E., Schimek-Jasch, T., Nestle, U., Massoptier, L., Stappers, PJ., Niessen, WJ. & Song, Y., 2014, Multimodal imaging towards individualized radiotherapy treatments. Massoptier, L. & Song, Y. (eds.). Lille: AQUILAB, p. 69-79 11 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  35. Hydranet: Data augmentation for regression neural networks

    Dubost, F., Bortsova, G., Adams, H., Ikram, M. A., Niessen, W., Vernooij, M. & de Bruijne, M., 2019, Medical Image Computing and Computer Assisted Intervention – MICCAI 2019 - 22nd International Conference, Proceedings. Shen, D., Yap, P-T., Liu, T., Peters, T. M., Khan, A., Staib, L. H., Essert, C. & Zhou, S. (eds.). Springer, p. 438-446 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11767 LNCS).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  36. Improved tissue segmentation by including an MR acquisition model

    Poot, D., Bruijne, M. D., Vernooij, M. W., Arfan Ikram, M. & Niessen, WJ., 2011, Multimodal Brain Image Analysis. Liu, T., Shen, D., Ibanez, J. & Tao, X. (eds.). Springer, p. 1-8 8 p. (Lecture Notes in Computer Science; vol. 7012).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  37. Integrating biological knowledge, novel imaging modalities, and modeling in breast cancer diagnosis

    Karssemeijer, N., Huisman, H., Hawkes, D., Hipwell, J., Bohler, T., Lesniak, J., Tanner, C., Szekely, G., Niessen, WJ. & Hahn, H., 2009, 2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro. s.n. (ed.). s.n., p. 386-389 4 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  38. Laplacian eigenmaps for multimodal groupwise image registration

    Polfliet, M., Klein, S., Niessen, W. J. & Vandemeulebroucke, J., 2017, Medical Imaging 2017: Image Processing. Styner, M. A. & Angelini, E. D. (eds.). Bellingham, WA, USA: SPIE, 7 p. 101331N. (Proceedings of SPIE; vol. 10133).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  39. Layer separation for vessel enhancement in interventional x-ray angiograms using morphological filtering and robust PCA

    Ma, H., Dibildox, G., Banerjee, J., Niessen, WJ., Schultz, C., Regar, E. & van Walsum, T., 2015, Augmented Environments for Computer-Assisted Interventions: Proceedings 10th International Workshop, AE-CAI 2015, held in Conjunction with MICCAI 2015. Linte, CA., Yaniv, Z. & Fallavollita, P. (eds.). Cham, Switzerland: Springer, p. 104-113 10 p. (Lecture Notes in Computer Science; vol. 9365).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  40. Longitudinal analysis of diffusion-weighted MRI with a ball-and-sticks model

    Arkesteijn, G. A. M., Poot, D. H. J., Niestijl, M., Vernooij, M. W., Niessen, W. J., Van Vliet, L. J. & Vos, F. M., 15 Jun 2017, 2017 IEEE 14th International Symposium on Biomedical Imaging, ISBI 2017. IEEE, p. 783-786 4 p. 7950635

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  41. Lumen Segmentation of atherosclerotic carotid arteries in CTA

    Tang, H., van Walsum, T., Hameeteman, K., Schaap, M., van Vliet, LJ. & Niessen, WJ., 2012, 9th IEEE International Symposium on Biomedical Imaging (ISBI). sn (ed.). sn: IEEE, p. 274-277 4 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  42. Model-based approach for tracking embryogenesis in caenorhabditis elegans fluorescence microscopy data

    Dzyubachyk, O., Jelier, R., Lehner, B., Niessen, WJ. & Meijering, E., 2009, Annual International Conference of the IEEE Engineering in Medicine and Biology Society - EMBC. s.n. (ed.). s.n., p. 1-4 4 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  43. Modeling the brain morphology distribution in the general aging population

    Huizinga, W., Poot, D. H. J., Roshchupkin, G., Bron, E. E., Ikram, M. A., Vernooij, M. W., Rueckert, D., Niessen, W. J. & Klein, S., 2016, Medical Imaging 2016: Biomedical Applications in Molecular, Structural, and Functional Imaging. Gimi, B. & Krol, A. (eds.). SPIE, Vol. 9788. p. 1-7 97880I. (Proceedings of SPIE; vol. 9788).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  44. Motion compensated literative reconstruction of a cardiac region of interest for CT

    Isola, AA., Ziegler, A., Köhler, T., van Stevendaal, U., Schäfer, D., Niessen, WJ. & Grass, M., 2008, ECIFBME Proceedings 22. nn (ed.). EMBEC, p. 646-650 5 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  45. On the evaluation of coronary artery centerline extraction algorithms - A standardized methodology and reference database

    Schaap, M., Metz, CT., van Walsum, T., van der Giessen, AG., Weustink, AC., Mollet, NRA., Krestin, GP. & Niessen, WJ., 2009, IFMBE Proceedings. World Congress on Medical Physics and Biomedical Engineering. s.n. (ed.). Munchen: s.n., p. 1897-1900 4 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  46. Particle Filtering Methods for Motion Analysis in Tagged MRI

    Smal, I., Niessen, WJ. & Meijering, E., 2010, 2010 IEEE International Symposium on Biomedical Imaging: From Nano to Macro - Proceedings. s.n. (ed.). Piscataway: IEEE Society, p. 488-491 4 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  47. Population imaging study IT infrastructure: An automated continuous workflow approach

    Koek, M., Achterberg, HC., de Groot, M., Vast, E., Klein, S. & Niessen, WJ., 2015, Proceedings of the 1st MICCAI Workshop on Management and Processing of Images for Population Imaging. Barillot, C., Dojat, M., Kennedy, D. & Niessen, WJ. (eds.). s.l.: s.n., p. 31-38 8 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  48. Quantification of Heterogeneity in Dynamic Contrast Enhanced MRI Data for Tumor Treatment Assessment

    Alic, L., Veenland, J., van Vliet, M., Dijke, CF., Eggermont, AMM. & Niessen, WJ., 2006, From Nano to Macro. Christensen, G., Coatrieux, JL., Fessler, J., Kovacevic, J., Liang, ZP., Meijering, E., Moura, J., Murphy, B., Niessen, WJ., Roux, C., Unser, M. & Wilson, D. (eds.). Piscataway: IEEE Society, p. 944-947 4 p. (International Symposium on Biomedical Imaging. Proceedings; vol. 4).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  49. Quantitative comparison of spot detection methods in live-cell fluorescence microscopy imaging

    Smal, I., Loog, M., Niessen, WJ. & Meijering, E., 2009, IEEE International Symposium on Biomedical Imaging: From Nano to Macro - ISBI 2009. s.n. (ed.). s.n., p. 1178-1181 4 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  50. Reproducible white matter tract segmentation using 3D U-net on a large-scale DTI dataset

    Li, B., de Groot, M., Vernooij, M. W., Ikram, M. A., Niessen, W. J. & Bron, E. E., 2018, Machine Learning in Medical Imaging - 9th International Workshop, MLMI 2018, Held in Conjunction with MICCAI 2018, Proceedings. Shi, Y., Suk, H-I. & Liu, M. (eds.). Springer, Vol. 11046 LNCS. p. 205-213 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11046 LNCS).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  51. Semi-automatic coronary artery centerline extraction in computed tomography angiography data

    Metz, C., Schaap, M., van der Giessen, A., van Walsum, T. & Niessen, WJ., 2007, Proc. 4th IEEE Int. Symposium on Biomedical Imaging: From Nano to Macro. s.n. (ed.). IEEE Society, p. 856-859 4 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  52. Shape Constrained Vessel Centerline Extraction by Integrating Surface Evolution and Topology Analysis

    Manniesing, R. & Niessen, WJ., 2006, From Nano to Macro. Christensen, G., Coatrieux, JL., Fessler, J., Kovacevic, J., Liang, ZP., Meijering, E., Moura, J., Murphy, B., Niessen, W., Roux, C., Unser, M. & Wilson, D. (eds.). Piscataway: IEEE Society, p. 165-168 4 p. (International Symposium on Biomedical Imaging. Proceedings; vol. 4).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  53. Super-resolution reconstruction of whole-body MRI mouse data: an interactive approach

    Khmelinskii, A., Kok, P., Dzyubachyk, O., Poot, DHJ., Suidgeest, E., Botha, CP., Niessen, WJ., van der Weerd, L., Meijering, E. & Lelieveldt, BPF., 2012, Proceedings of the 9th Symposium on Biomedical Imaging 2012: From Nano to Macro. Frangi, A., Santos, A., Ober, R. & Ruekert, D. (eds.). Piscataway, NJ, USA: IEEE Society, p. 1723-1726 4 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  54. Symmetry based computer aided segmentation of occluded cerebral arteries on CT angiography

    Santos, EMM., Marquering, HA., Berkhemer, OA., van der Zwam, W., van der Lugt, A., Majoie, CB. & Niessen, WJ., 2014, 13th Mediterranean Conference on Medical and Biological Engineering and Computing 2013, MEDICON 2013. nb (ed.). nb: nb, p. 237-240 4 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  55. The effect of non-contrast CT slice thickness on thrombus density and perviousness assessment

    Tolhuisen, M. L., Enthoven, J., Santos, E. M. M., Niessen, W. J., Beenen, L. F. M., Dippel, D. W. J., van der Lugt, A., van Zwam, W. H., Roos, Y. B. W. E. M., van Oostenbrugge, R. J. & More Authors, 2017, Molecular Imaging, Reconstruction and Analysis of Moving Body Organs, and Stroke Imaging and Treatment - 5th International Workshop, CMMI 2017 2nd International Workshop, RAMBO 2017 and 1st International Workshop, SWITCH 2017 Held in Conjunction with MICCAI 2017, Proceedings. Cardoso, J., Arbel, T. & Gao, F. (eds.). Springer, Vol. 10555 LNCS. p. 168-175 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10555 LNCS).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  56. The structural disconnectome: A pathology-sensitive extension of the structural connectome

    Langen, C. D., Vernooij, M. W., Cremers, L. G. M., Huizinga, W., De Groot, M., Ikram, M. A., White, T. & Niessen, W. J., 2017, 2017 IEEE 14th International Symposium on Biomedical Imaging, ISBI 2017. IEEE, p. 366-370 7950539

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  57. Total Correlation-Based Groupwise Image Registration for Quantitative MRI

    Guyader, J. M., Huizinga, W., Fortunati, V., Poot, D. H., Kranenburg, M. V., Veenland, J. F., Paulides, M. M., Niessen, W. J. & Klein, S., 16 Dec 2016, Proceedings - 29th IEEE Conference on Computer Vision and Pattern Recognition Workshops, CVPRW 2016. IEEE, p. 626-633 8 p. 7789574

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  58. Towards robust CT-ultrasound registration using deep learning methods

    Sun, Y., Moelker, A., Niessen, W. J. & van Walsum, T., 2018, Understanding and Interpreting Machine Learning in Medical Image Computing Applications - First International Workshops MLCN 2018, DLF 2018, and iMIMIC 2018, Held in Conjunction with MICCAI 2018, Proceedings. Springer, Vol. 11038 LNCS. p. 43-51 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11038 LNCS).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  59. Two point minimum cost path approach for CTA coronary centerline extraction, 3D segmentation in the clinic: a grand challenge II

    Metz, CT., Schaap, M., van Walsum, T. & Niessen, WJ., 2008, Proceedings MICCAI 2008 workshop. nn (ed.). New York: MICCAI, p. 1-8 8 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  60. Vascular image analysis: From vessel enhancement to intravascular invterventions

    Niessen, WJ., 2006, ASCI 2006: Proceedings of the 12th annual conference of the Advanced School for Computing and Imaging. Lelieveldt, B., Haverkort, B., de Laat, C. T. A. M. & Heijnsdijk, J. W. J. (eds.). Delft: ASCI, p. 8-8 1 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  61. kNN-based Multi-Spectral MRI Brain Tissue Classification: Manual Training versus Automated Atlas-based Training

    Vrooman, HA., Cocosco, C. A., Stokking, R., Ikram, MA., Vernooij, MW., Breteler, MM. & Niessen, WJ., 2006, ASCI 2006: Proceedings of the 12th annual conference of the Advanced School for Computing and Imaging. Lelieveldt, B. P. F., Haverkort, B., de Laat, C. T. A. M. & Heijnsdijk, J. W. J. (eds.). Delft: ASCI, p. 440-447 8 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  62. Abstract › Scientific
  63. Cognitive functioning in patients with disorders along the heart-brain axis: the role of cerebral blood flow

    Leeuwis, A. E., Hooghiemstra, A. M., Bron, E. E., Kuipers, S., Oudeman, E. A., Kalay, T., Brunner-La-Rocco, H-P. H. P., Kappelle, L. J., Niessen, W. & More Authors, 2019, p. 755.

    Research output: Contribution to conferenceAbstractScientific

  64. Conference article › Scientific › Peer-reviewed
  65. A patient-specific visualization tool for comprehensive analysis of coronary CTA and perfusion MRI data

    Kirisli, HA., Gupta, V., Kirschbaum, S., Neefjes, L., Geuns, RJ., Mollet, N., Lelieveldt, BPF., Reiber, JHC., van Walsum, T. & Niessen, WJ., 2011, In : Proceedings of SPIE- International Society for Optical Engineering. 7964, p. 1-4 4 p.

    Research output: Contribution to journalConference articleScientificpeer-review

  66. Automated localication of periventricular and subcortical white matter lesions

    van der Lijn, F., Vernooij, M. W., Arfan Ikram, M., Vrooman, HA., Rueckert, D., Hammers, A., Breteler, MMB. & Niessen, WJ., 2007, In : Proceedings of SPIE- International Society for Optical Engineering. 6512

    Research output: Contribution to journalConference articleScientificpeer-review

  67. Automatic segmentations of arteries through the skull base

    Manniesing, R. & Niessen, WJ., 2007, In : Proceedings of SPIE- International Society for Optical Engineering. 6512

    Research output: Contribution to journalConference articleScientificpeer-review

  68. Developing a tool for the validation of quantitative DCE-MRI

    Bol, K., Haeck, JC., Alic, L., Bernsen, MR., de Jong, M., Veenland, JF. & Niessen, WJ., 2011, In : Proceedings of SPIE- International Society for Optical Engineering. 7965, p. 1-4 4 p.

    Research output: Contribution to journalConference articleScientificpeer-review

  69. Influence of image registration on ADC images computed from free-breathing diffusion MRIs of the abdomen

    Guyader, J-M., Bernardin, L., Douglas, NHM., Poot, DHJ., Niessen, WJ. & Klein, S., 2014, In : Progress in Biomedical Optics and Imaging. 9034, p. 1-16 16 p.

    Research output: Contribution to journalConference articleScientificpeer-review

  70. Multispectral MRI centerline tracking in carotid arteries

    Tang, H., van Walsum, T., van Onkelen, RS., Klein, S., Hameeteman, K., Schaap, M., van den Bouwhuijsen, QJA., Witteman, JCM., van der Lugt, A., Niessen, WJ. & van Vliet, LJ., 2011, In : Proceedings of SPIE- International Society for Optical Engineering. 7962, p. 1-7 7 p.

    Research output: Contribution to journalConference articleScientificpeer-review

  71. Nonrigid motion compensation in B-mode and contrast enhanced ultrasound image sequences of the carotid artery

    Carvalho, DDB., Akkus, Z., Bosch, JG., van den Oord, SCH., Niessen, WJ. & Klein, S., 2014, In : Progress in Biomedical Optics and Imaging. 9034, art nr 90340N, p. 1-3 3 p.

    Research output: Contribution to journalConference articleScientificpeer-review

  72. Plaque characterization in ex vivo MRI evaluated by dense 3D correspondence with histology

    van Engelen, A., Klein, S., Verhagen, H., Groen, H., Wentzel, JJ., van der Lugt, A., Bruijne, M. D. & Niessen, WJ., 2011, In : Proceedings of SPIE- International Society for Optical Engineering. 7963, p. 1-11 11 p.

    Research output: Contribution to journalConference articleScientificpeer-review

  73. Region based level set segmentation of the outer wall of the carotid bifurcation in CTA

    Vukadinovic, D., van Walsum, T., Manniesing, R., Rozie, S., van der Lugt, A. & Niessen, WJ., 2011, In : Proceedings of SPIE- International Society for Optical Engineering. 7962P, p. 1-4 4 p.

    Research output: Contribution to journalConference articleScientificpeer-review

  74. Volume preserving image registration via a post-processing stage

    Hameeteman, K., Veenland, JF. & Niessen, WJ., 2008, In : Proceedings of SPIE- International Society for Optical Engineering. 6914, p. 1-10 10 p.

    Research output: Contribution to journalConference articleScientificpeer-review

  75. Wavelet based free-form deformations for nonrigid registration

    Sun, W., Niessen, WJ. & Klein, S., 2014, In : Progress in Biomedical Optics and Imaging. 9034, art nr 90343N, p. 1-4 4 p.

    Research output: Contribution to journalConference articleScientificpeer-review

  76. kNN-Based Multi-Spectral MRI Brain Tissue Classification: Manual Training versus Automatic Atlas-based Training

    Vrooman, HA., Cocosco, C. A., Stokking, R., Ikram, MA., Vernooij, MW., Breteler, MM. & Niessen, WJ., 2006, In : Proceedings of SPIE- International Society for Optical Engineering. 6144, p. 944-947 4 p.

    Research output: Contribution to journalConference articleScientificpeer-review

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