1. Conference article › Scientific › Peer-reviewed
  2. A patient-specific visualization tool for comprehensive analysis of coronary CTA and perfusion MRI data

    Kirisli, HA., Gupta, V., Kirschbaum, S., Neefjes, L., Geuns, RJ., Mollet, N., Lelieveldt, BPF., Reiber, JHC., van Walsum, T. & Niessen, WJ., 2011, In : Proceedings of SPIE- International Society for Optical Engineering. 7964, p. 1-4 4 p.

    Research output: Contribution to journalConference articleScientificpeer-review

  3. Automated localication of periventricular and subcortical white matter lesions

    van der Lijn, F., Vernooij, M. W., Arfan Ikram, M., Vrooman, HA., Rueckert, D., Hammers, A., Breteler, MMB. & Niessen, WJ., 2007, In : Proceedings of SPIE- International Society for Optical Engineering. 6512

    Research output: Contribution to journalConference articleScientificpeer-review

  4. Automatic segmentations of arteries through the skull base

    Manniesing, R. & Niessen, WJ., 2007, In : Proceedings of SPIE- International Society for Optical Engineering. 6512

    Research output: Contribution to journalConference articleScientificpeer-review

  5. Developing a tool for the validation of quantitative DCE-MRI

    Bol, K., Haeck, JC., Alic, L., Bernsen, MR., de Jong, M., Veenland, JF. & Niessen, WJ., 2011, In : Proceedings of SPIE- International Society for Optical Engineering. 7965, p. 1-4 4 p.

    Research output: Contribution to journalConference articleScientificpeer-review

  6. Influence of image registration on ADC images computed from free-breathing diffusion MRIs of the abdomen

    Guyader, J-M., Bernardin, L., Douglas, NHM., Poot, DHJ., Niessen, WJ. & Klein, S., 2014, In : Progress in Biomedical Optics and Imaging. 9034, p. 1-16 16 p.

    Research output: Contribution to journalConference articleScientificpeer-review

  7. Multispectral MRI centerline tracking in carotid arteries

    Tang, H., van Walsum, T., van Onkelen, RS., Klein, S., Hameeteman, K., Schaap, M., van den Bouwhuijsen, QJA., Witteman, JCM., van der Lugt, A., Niessen, WJ. & van Vliet, LJ., 2011, In : Proceedings of SPIE- International Society for Optical Engineering. 7962, p. 1-7 7 p.

    Research output: Contribution to journalConference articleScientificpeer-review

  8. Nonrigid motion compensation in B-mode and contrast enhanced ultrasound image sequences of the carotid artery

    Carvalho, DDB., Akkus, Z., Bosch, JG., van den Oord, SCH., Niessen, WJ. & Klein, S., 2014, In : Progress in Biomedical Optics and Imaging. 9034, art nr 90340N, p. 1-3 3 p.

    Research output: Contribution to journalConference articleScientificpeer-review

  9. Plaque characterization in ex vivo MRI evaluated by dense 3D correspondence with histology

    van Engelen, A., Klein, S., Verhagen, H., Groen, H., Wentzel, JJ., van der Lugt, A., Bruijne, M. D. & Niessen, WJ., 2011, In : Proceedings of SPIE- International Society for Optical Engineering. 7963, p. 1-11 11 p.

    Research output: Contribution to journalConference articleScientificpeer-review

  10. Region based level set segmentation of the outer wall of the carotid bifurcation in CTA

    Vukadinovic, D., van Walsum, T., Manniesing, R., Rozie, S., van der Lugt, A. & Niessen, WJ., 2011, In : Proceedings of SPIE- International Society for Optical Engineering. 7962P, p. 1-4 4 p.

    Research output: Contribution to journalConference articleScientificpeer-review

  11. Volume preserving image registration via a post-processing stage

    Hameeteman, K., Veenland, JF. & Niessen, WJ., 2008, In : Proceedings of SPIE- International Society for Optical Engineering. 6914, p. 1-10 10 p.

    Research output: Contribution to journalConference articleScientificpeer-review

  12. Wavelet based free-form deformations for nonrigid registration

    Sun, W., Niessen, WJ. & Klein, S., 2014, In : Progress in Biomedical Optics and Imaging. 9034, art nr 90343N, p. 1-4 4 p.

    Research output: Contribution to journalConference articleScientificpeer-review

  13. kNN-Based Multi-Spectral MRI Brain Tissue Classification: Manual Training versus Automatic Atlas-based Training

    Vrooman, HA., Cocosco, C. A., Stokking, R., Ikram, MA., Vernooij, MW., Breteler, MM. & Niessen, WJ., 2006, In : Proceedings of SPIE- International Society for Optical Engineering. 6144, p. 944-947 4 p.

    Research output: Contribution to journalConference articleScientificpeer-review

  14. Abstract › Scientific
  15. Cognitive functioning in patients with disorders along the heart-brain axis: the role of cerebral blood flow

    Leeuwis, A. E., Hooghiemstra, A. M., Bron, E. E., Kuipers, S., Oudeman, E. A., Kalay, T., Brunner-La-Rocco, H-P. H. P., Kappelle, L. J., Niessen, W. & More Authors, 2019, p. 755.

    Research output: Contribution to conferenceAbstractScientific

  16. Conference contribution › Scientific › Peer-reviewed
  17. 3D Segmentation in the clinic: a grand challenge II - coronary artery tracking

    Metz, CT., Schaap, M., van Walsum, T., van der Giessen, AG., Weustink, AC., Mollet, NRA., Krestin, GP. & Niessen, WJ., 2008, Proceedings of the MICCAI 2008 workshop. Cattin, P., Feuerstein, M. & et al (eds.). nn, p. 2-7 6 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  18. 3D X-ray image guidance in interventional radiology

    Niessen, WJ., van de Kraats, E. B., Baert, S. A. M. & van Walsum, T., 2007, Proc. 4th IEEE Int. Symposium on Biomedical Imaging: From Nano tot Macro. s.n. (ed.). IEEE Society, p. 1000-1003 4 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  19. 3D catheter tip tracking in 2D x-ray image sequences using a hidden Markov model and 3D rotational angiography

    Ambrosini, P., Smal, I., Ruijters, D., Niessen, WJ., Moelker, A. & van Walsum, T., 2015, Augmented Environments for Computer-Assisted Interventions: Proceedings 10th International Workshop, AE-CAI 2015, held in Conjunction with MICCAI 2015. Linte, CA., Yaniv, Z. & Fallavollita, P. (eds.). Cham, Switzerland: Springer, p. 38-49 12 p. (Lecture Notes in Computer Science; vol. 9365).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  20. A Hybrid Deep Learning Framework for Integrated Segmentation and Registration: Evaluation on Longitudinal White Matter Tract Changes

    Li, B., Niessen, W., Klein, S., de Groot, M., Arfan Ikram, M., Vernooij, M. & Bron, E. E., 2019, Medical Image Computing and Computer Assisted Intervention – MICCAI 2019 . Shen, D., Liu, T., Peters, T. M., Staib, L. H., Essert, C., Zhou, S., Yap, P-T. & Khan, A. (eds.). Springer, p. 645-653 (Lecture Notes in Computer Science ; vol. 11766).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  21. A Variational model for level-set based cell tracking in time-lapse fluorescence microscopy images

    Dzyubachyk, O., Niessen, WJ. & Meijering, E., 2007, Proc. 4th IEEE Int. Symposium on Biomedical Imaging: From Nano tot Macro. s.n. (ed.). IEEE Society, p. 97-100 4 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  22. A discriminative event based model for Alzheimer’s disease progression modeling

    Venkatraghavan, V., Bron, E. E., Niessen, W. J. & Klein, S., 2017, Proceedings of 25th International Conference, IPMI 2017. Springer, Vol. 10265 LNCS. p. 121-133 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10265 LNCS).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  23. A patient-specific coronary artery density estimate

    Shahzad, R., Schaap, MA., van Walsum, T., Klein, S., Weustink, AC., van Vliet, LJ. & Niessen, WJ., 2010, Proc. 2010 IEEE International Symposium on Biomedical Imaging: From Nano to Macro. s.n. (ed.). s.n.: s.n., p. 9-12 4 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  24. Accurate estimation of microtubule dynamics using kymographs and variable-rate particle filters

    Smal, I., Grigoriev, I., Akhmanova, A., Niessen, WJ. & Meijering, E., 2009, Annual International Conference of the IEEE Engineering in Medicine and Biology Society - EMBC. s.n. (ed.). s.n., p. 1-4 4 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  25. Advanced Particle Filtering for Multiple Object Tracking in Dynamic Fluorescence Microscopy Images

    Smal, I., Niessen, WJ. & Meijering, E., 2007, IEEE International Symposium on Biomedical Imaging: From Nano to Macro. s.n. (ed.). s.n.: IEEE Society, p. 1048-1051 4 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  26. Alignment of 4D Coronary CTA with Monoplane X-Ray Angiography

    Metz, C., Schaap, M., Klein, S., Rijnbeek, P., Neefjes, L., Mollet, N., Schultz, C., Serruys, P., Niessen, WJ. & van Walsum, T., 2011, MICCAI workshop: Augmented Environments for Computer Assisted Interventions. sn (ed.). Springer, p. 1-9 9 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  27. Automactic segmentation of brain tissue and white matter lesions in MRI

    Boer, R., van der Lijn, F., Vrooman, HA., Vernooij, M. W., Ikram, MA., Breteler, MMB. & Niessen, WJ., 2007, 4th IEEE Int. Symposium on Biomedical Imaging: From Nano to Macro. s.n. (ed.). IEEE Society, p. 652-655 4 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  28. Automated Quantification of Enlarged Perivascular Spaces in Clinical Brain MRI across Sites

    Dubost, F., Dünnwald, M., Huff, D., Scheurmann, V., Schreiber, F., Vernooij, M. W., Niessen, W., Skalej, M., Schreiber, S. & More Authors, 2019, Proceedings of 2nd International Workshop on Context-Aware Surgical Theaters,OR 2.0 Context-Aware Operating Theaters and Machine Learning in Clinical Neuroimaging, MLCN 2019. Zhou, L., Sarikaya, D., Kia, S. M., Speidel, S., Malpani, A., Hashimoto, D., Habes, M., Löfstedt, T., Ritter, K. & Wang, H. (eds.). Springer, p. 103-111 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11796 LNCS).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  29. Automatic Classification of Calcification in the Coronary Vessel Tree

    Shazhad, R., van Vliet, LJ., Niessen, WJ. & van Walsum, T., 2014, MICCAI Challenge on Automated Coronary Artery Scoring, orCAScore 2014. s.n. (ed.). MICCAI, p. 14-21 8 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  30. Automatic detection of calcified lesions in the descending aorta using contrast enhanced CT scans

    Shahzad, R., Schaap, M., Goncalves, FB., Metz, C., Tang, H., van Walsum, T., Moelker, A., van Vliet, LJ. & Niessen, WJ., 2012, 9th IEEE International Symposium on Biomedical Imaging (ISBI). sn (ed.). Barcelona: s.n., p. 250-253 4 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  31. Averaged stochastic optimization for medical image registration based on variance reduction

    Sun, W., Poot, D. H. J., Yang, X., Niessen, W. J. & Klein, S., 1 Jan 2018, Biomedical Image Registration - 8th International Workshop, WBIR 2018, Proceedings. Klein, S., Sommer, S., Durrleman, S. & Staring, M. (eds.). Springer, Vol. 10883 LNCS. p. 69-79 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10883 LNCS).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  32. Bayesian Tracking for Fluorescence Microscopic Imaging

    Smal, I., Niessen, WJ. & Meijering, E., 2006, From Nano to Macro. Christensen, G., Coatrieux, JL., Fessler, J., Kovacevic, J., Liang, ZP., Meijering, E., Moura, J., Murphy, B., Niessen, W., Roux, C., Unser, M. & Wilson, D. (eds.). Piscataway: IEEE Society, p. 550-553 4 p. (International Symposium on Biomedical Imaging. Proceedings; vol. 4).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  33. Cardiac-Motion Correction for Helical CT

    Isola, AA., van Stevendaal, U., Schaefer, D., Niessen, WJ. & Grass, M., 2010, 2009 IEEE Nuclear Science Symposium Conference Record. s.n. (ed.). s.n., p. 3247-3250 4 p. (IEEE Conference Record - Nuclear Science Symposium & Medical Imaging Conference; vol. 1-5).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  34. Carotid artery segmentation and plaque quantification in CTA

    Vukadinovic, D., van Walsum, T., Rozie, S., de Weert, TT., Manniesing, R., van der Lugt, A. & Niessen, WJ., 2009, IEEE International Symposium on Biomedical Imaging 1+2. s.n. (ed.). IEEE Society, p. 835-838 4 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  35. Carotid artery wall segmentation by coupled surface graph cuts

    Arias, A., Petersen, J., van Engelen, A., Tang, H., Selwaness, M., Witteman, JCM., van der Lugt, A., Niessen, WJ. & Bruijne, M. D., 2013, Lecture Notes in Computer Science. s.n. (ed.). Berlin: Springer, p. 38-47 10 p. (Lecture Notes in Computer Science; vol. 7766).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  36. Cerebellum segmentation in MRI using atlas registration and local multi-scale image descriptors

    van der Lijn, F., Bruijne, M., Hoogendam, YY., Klein, S., Hameeteman, K., Breteler, MMB. & Niessen, WJ., 2009, Proceedings of IEEE International Symposium on Biomedical Imaging: Macro to Nano. s.n. (ed.). s.n., p. 221-224 4 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  37. Classification of malignant and benign liver tumors using a radiomics approach

    Starmans, M. P. A., Miclea, R. L., Van Der Voort, S. R., Niessen, W. J., Thomeer, M. G. & Klein, S., 2018, Medical Imaging 2018: Image Processing. SPIE, Vol. 10574. 105741D

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  38. Combining graph cuts, atlas registration, and voxel classification for hippocampus segmentation in MR images

    van der Lijn, F., den Heijer, T., Breteler, MMB. & Niessen, WJ., 2007, Mathematical methods in biomedical image analysis- IN PRESS. Nielsen, M., Niessen, WJ. & Westin, CF. (eds.). IEEE Society, p. 1-5 5 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  39. Confidence of model based shape reconstruction from sparse data

    Baka, N., Bruijne, M., Reiber, JHC., Niessen, WJ. & Lelieveldt, BPF., 2010, Proceedings of the 2010 IEEE International Symposium on Biomedical Imaging: From Nano to Macro. Meijering et al, E. & Niessen, W. (eds.). Piscataway, NJ, USA: IEEE Society, p. 1077-1080 4 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  40. Correspondence free 3D statistical shape model fitting to sparse X-ray projections

    Baka, N., Niessen, WJ., Kaptein, BL., van Walsum, T., Ferarrini, L., Reiber, JHC. & Lelieveldt, BPF., 2010, Medical Imaging 2010: Image processing. Haynor, DR. & Dawant, BM. (eds.). Bellingham, WA, USA: SPIE, p. 1-9 9 p. (Proceedings of SPIE- International Society for Optical Engineering; vol. 7623).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  41. Early diagnosis of dementia based on intersubject whole-brain dissimilarities

    Klein, S., Loog, M., van der Lijn, F., den Heijer, T., Hammers, A., Bruijne, M., van der Lugt, A., Duin, RPW., Breteler, MMB. & Niessen, WJ., 2010, Proceedings of the 2010 IEEE International Symposium on Biomedical Imaging: From Nano to Macro. S.N. (ed.). Piscataway, NJ USA: IEEE Society, p. 249-252 4 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  42. Efficient projection model for blobs in motion-compensated iterative cone-beam CT

    Isola, AA., Ziegler, A., Kohler, T. & Niessen, WJ., 2009, IEEE Nuclear Science Symposium / Medical Imaging Conference. s.n. (ed.). s.n., p. 3405-3412 8 p. (IEEE Nuclear Science Symposium - Conference Record; vol. 1-9).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  43. End-to-end diagnosis and segmentation learning from cardiac magnetic resonance imaging

    Snaauw, G., Gong, D., Maicas, G., van den Hengel, A., Niessen, W., Verjans, J. & Carneiro, G., 2018, ISBI 2019 - 2019 IEEE International Symposium on Biomedical Imaging. IEEE, p. 802-805 4 p. 8759276

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  44. Energy minimazation methods for cell motion correction and intracellular analysis in live-cell fluorescence microscopy

    Dzyubachyk, O., van Cappellen, WA., Essers, J., Niessen, WJ. & Meijering, E., 2009, IEEE International Symposium on Biomedical Imaging: From Nano to Macro - ISBI. s.n. (ed.). s.n., p. 1127-1130 4 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  45. Event-Based Modeling with High-Dimensional Imaging Biomarkers for Estimating Spatial Progression of Dementia

    Venkatraghavan, V., Dubost, F., Bron, E. E., Niessen, W. J., de Bruijne, M. & Klein, S., 2019, Information Processing in Medical Imaging - 26th International Conference, IPMI 2019, Proceedings. Chung, A. C. S., Gee, J. C., Yushkevich, P. A. & Bao, S. (eds.). Springer, Vol. 11492. p. 169-180 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11492 LNCS).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  46. Fastr: a work flow engine for advanced data flows

    Achterberg, HC., Koek, M. & Niessen, WJ., 2015, Proceedings of the 1st MICCAI Workshop on Management and Processing of Images for Population Imaging. Barillot, C., Dojat, M., Kennedy, D. & Niessen, WJ. (eds.). s.l.: s.n., p. 39-46 8 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  47. Fully automatic and real-time catheter segmentation in X-ray fluoroscopy

    Ambrosini, P., Ruijters, D., Niessen, W. J., Moelker, A. & van Walsum, T., 2017, Medical Image Computing and Computer Assisted Intervention − MICCAI 2017 - 20th International Conference, Proceedings. Springer, Vol. 10434 LNCS. p. 577-585 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10434 LNCS).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  48. Fully automatic cardiac segmentation from 3D CTA data: a multiatlas based approach

    Kirisli, HA., Schaap, MA., Klein, S., Neefjes, L., Weustink, AC., van Walsum, T. & Niessen, WJ., 2010, Proc. SPIE. Dawant, BM. & Haynor, DR. (eds.). s.n.: s.n., p. 1-9 9 p. (Proceedings of SPIE- International Society for Optical Engineering; vol. 7623).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  49. GPU accelerated alignment of 3-D CTA with 2-D X-ray data for improved guidance in coronary interventions

    Metz, CT., Schaap, M., Klein, S., Weustink, AC., Mollet, NRA., Schulz, C., Geuns, RJ., Serruys, PW. & Niessen, WJ., 2009, Proceedings of IEEE International Symposium on Biomedical Imaging: Macro to Nano, 2009. s.n. (ed.). s.n., p. 959-962 4 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  50. Gp-Unet: Lesion detection from weak labels with a 3D regression network

    Dubost, F., Bortsova, G., Adams, H. H., Ikram, M. A., Niessen, W. J., Vernooij, M. W. & de Bruijne, M., 2017, Medical Image Computing and Computer Assisted Intervention − MICCAI 2017 - 20th International Conference, Proceedings. Descoteaux, M. (ed.). Springer, Vol. 10435 LNCS. p. 214-221 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10435 LNCS).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  51. Groupwise image registration of multimodal head-and-neck images

    Guyader, J-M., Huizinga, W., Fortunati, V., Veenland, JF., Paulides, MM., Niessen, WJ. & Klein, S., 2015, Proceedings of the 12th IEEE International Symposium on Biomedical Imaging. Kova¿evi¿, J. & Angelini, E. (eds.). Piscataway: IEEE Society, p. 730-733 4 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  52. Heritability of connectivity and disconnectivity of the brain in a population-based study

    Langen, C. D., Roshchupkin, G., Adams, H. H., De Groot, M., Vos, F., Vernooij, M. W., Ikram, M. A. & Niessen, W. J., 15 Jun 2017, Proceedings of IEEE 14th International Symposium on Biomedical Imaging, ISBI 2017. IEEE, p. 349-353 5 p. 7950535

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  53. Human computer interaction in segmenting organs at risk for radiotherapy: A pilot study

    Ramkumar, A., Dolz, J., Kirisli, HA., Varga, E., Schimek-Jasch, T., Nestle, U., Massoptier, L., Stappers, PJ., Niessen, WJ. & Song, Y., 2014, Multimodal imaging towards individualized radiotherapy treatments. Massoptier, L. & Song, Y. (eds.). Lille: AQUILAB, p. 69-79 11 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

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