1. 2009
  2. Efficient projection model for blobs in motion-compensated iterative cone-beam CT

    Isola, AA., Ziegler, A., Kohler, T. & Niessen, WJ., 2009, IEEE Nuclear Science Symposium / Medical Imaging Conference. s.n. (ed.). s.n., p. 3405-3412 8 p. (IEEE Nuclear Science Symposium - Conference Record; vol. 1-9).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  3. Energy minimazation methods for cell motion correction and intracellular analysis in live-cell fluorescence microscopy

    Dzyubachyk, O., van Cappellen, WA., Essers, J., Niessen, WJ. & Meijering, E., 2009, IEEE International Symposium on Biomedical Imaging: From Nano to Macro - ISBI. s.n. (ed.). s.n., p. 1127-1130 4 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  4. GPU accelerated alignment of 3-D CTA with 2-D X-ray data for improved guidance in coronary interventions

    Metz, CT., Schaap, M., Klein, S., Weustink, AC., Mollet, NRA., Schulz, C., Geuns, RJ., Serruys, PW. & Niessen, WJ., 2009, Proceedings of IEEE International Symposium on Biomedical Imaging: Macro to Nano, 2009. s.n. (ed.). s.n., p. 959-962 4 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  5. Integrating biological knowledge, novel imaging modalities, and modeling in breast cancer diagnosis

    Karssemeijer, N., Huisman, H., Hawkes, D., Hipwell, J., Bohler, T., Lesniak, J., Tanner, C., Szekely, G., Niessen, WJ. & Hahn, H., 2009, 2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro. s.n. (ed.). s.n., p. 386-389 4 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  6. Iterative co-linearity filtering and parameterization of fiber tracts in the entire cingulum

    de Groot, M., Vernooij, M. W., Klein, S., Leemans, A., Boer, R., van der Lugt, A., Breteler, MMB. & Niessen, WJ., 2009, In : Lecture Notes in Computer Science. 5761, p. 853-860 8 p.

    Research output: Contribution to journalArticleScientificpeer-review

  7. Model-based approach for tracking embryogenesis in caenorhabditis elegans fluorescence microscopy data

    Dzyubachyk, O., Jelier, R., Lehner, B., Niessen, WJ. & Meijering, E., 2009, Annual International Conference of the IEEE Engineering in Medicine and Biology Society - EMBC. s.n. (ed.). s.n., p. 1-4 4 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  8. On the evaluation of coronary artery centerline extraction algorithms - A standardized methodology and reference database

    Schaap, M., Metz, CT., van Walsum, T., van der Giessen, AG., Weustink, AC., Mollet, NRA., Krestin, GP. & Niessen, WJ., 2009, IFMBE Proceedings. World Congress on Medical Physics and Biomedical Engineering. s.n. (ed.). Munchen: s.n., p. 1897-1900 4 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  9. Patient specific 4D coronary models from ECG-gated CTA data for intra-operative dynamic alignment of CTA with X-ray images

    Metz, CT., Schaap, M., Klein, S., Neefjes, L., Capuano, E., Schultz, C., van Geuns, L., Serruys, PW., van Walsum, T. & Niessen, WJ., 2009, In : Lecture Notes in Computer Science. p. 369-376 8 p.

    Research output: Contribution to journalArticleScientificpeer-review

  10. Postmenopausal hormone therapy and regional brain volumes: the whims-MRI study

    den Heijer, T., van der Lijn, F., Niessen, WJ. & Breteler, MM., 2009, In : Neurology. 73(18), p. 1514-1514 1 p.

    Research output: Contribution to journalArticleScientificpeer-review

  11. Quantitative comparison of spot detection methods in live-cell fluorescence microscopy imaging

    Smal, I., Loog, M., Niessen, WJ. & Meijering, E., 2009, IEEE International Symposium on Biomedical Imaging: From Nano to Macro - ISBI 2009. s.n. (ed.). s.n., p. 1178-1181 4 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  12. Selective deblurring for improved calcificaton visualization and quantification in carotid CT angiografphy: validation using micro-CT

    Rollano-Hijarrubia, E., Manniesing, R. & Niessen, WJ., 2009, In : IEEE Transactions on Medical Imaging. 28(3), p. 446-453 8 p.

    Research output: Contribution to journalArticleScientificpeer-review

  13. Standardized evaluation metholology and reference database for evaluating coronary artery centerline extraction algorithms

    Schaap, M., Metz, CT., van Walsum, T., van der Giessen, AG., Weustink, AC., Mollet, NRA., Bauer, C., Bogunovic, H., de Castro, C., Deng, X., Dikici, E., O'Donnel, T., Frenay, M., Friman, O., Hernández Hoyos, M., Kitslaar, P. H., Krissian, K., Kühnel, C., Luengo-Oroz, MA., Orkisz, M. & 10 othersSmedby, Ö., Styner, M., Szymczak, A., Tek, H., Wang, H., Warfield, S. K., Zambal, S., Zhang, Y., Krestin, GP. & Niessen, WJ., 2009, In : Medical Image Analysis. 13(5), p. 701-714 14 p.

    Research output: Contribution to journalArticleScientificpeer-review

  14. White matter lesion extension to automatic brain tissue segmentation on MRI

    Boer, R., Vrooman, HA., van der Lijn, F., Vernooij, M. W., Ikram, MA., van der Lugt, A., Breteler, MM. & Niessen, WJ., 2009, In : NeuroImage. 1;45(4), p. 1151-1161 11 p.

    Research output: Contribution to journalArticleScientificpeer-review

  15. White matter microstructural integrity and coginitive function in a general elderly population

    Vernooij, M. W., Ikram, MA., Vrooman, HA., Wielopolski, PA., Krestin, GP., Hofman, A., Niessen, WJ., van der Lugt, A. & Breteler, MM., 2009, In : Archives of General Psychiatry. 66(5), p. 545-553 9 p.

    Research output: Contribution to journalArticleScientificpeer-review

  16. Withdrawal of statins and risk of subarachnoid haemorrhage

    Risselada, R., Straatman, H., van Kooten, F., Dippel, DWJ., van der Lugt, A., Niessen, WJ., Firouzian, A., Herings, RMC. & Sturkenboom, MCJM., 2009, In : Stroke. 40(8), p. 2887-2892 6 p.

    Research output: Contribution to journalArticleScientificpeer-review

  17. 2008
  18. 3D Segmentation in the clinic: a grand challenge II - coronary artery tracking

    Metz, CT., Schaap, M., van Walsum, T., van der Giessen, AG., Weustink, AC., Mollet, NRA., Krestin, GP. & Niessen, WJ., 2008, Proceedings of the MICCAI 2008 workshop. Cattin, P., Feuerstein, M. & et al (eds.). nn, p. 2-7 6 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  19. Fast noise reduction in computed tomography for improved 3-D visualization

    Schaap, M., Schilham, AM., Zuiderveld, KJ., Prokop, M., Vonken, EJ. & Niessen, WJ., 2008, In : IEEE Transactions on Medical Imaging. 27, 8, p. 1120-1129 10 p.

    Research output: Contribution to journalArticleScientificpeer-review

  20. Hippocampus segmentation in MR images using atlas registration, voxel classification, and graph cuts

    van der Lijn, F., den Heijer, T., Breteler, MMB. & Niessen, WJ., 2008, In : NeuroImage. 43, 4, p. 708-720 13 p.

    Research output: Contribution to journalArticleScientificpeer-review

  21. Motion compensated literative reconstruction of a cardiac region of interest for CT

    Isola, AA., Ziegler, A., Köhler, T., van Stevendaal, U., Schäfer, D., Niessen, WJ. & Grass, M., 2008, ECIFBME Proceedings 22. nn (ed.). EMBEC, p. 646-650 5 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  22. Motion-compensated iterative cone-beam CT image reconstruction with adapted blobs as basis functions

    Isola, AA., Ziegler, A., Koehler, T., Niessen, WJ. & Grass, M., 2008, In : Physics in Medicine and Biology. 7, 53(23), p. 6777-6797 21 p.

    Research output: Contribution to journalArticleScientificpeer-review

  23. Prevalence and risk factors of cerebral microbleeds: The Rotterdam Scan Study

    Vernooij, M. W., van der Lugt, A., Ikram, MA., Wielopolski, PA., Niessen, WJ., Hofman, A., Krestin, GP. & Breteler, MMB., 2008, In : Neurology. 70, p. 1208-1214 7 p.

    Research output: Contribution to journalArticleScientificpeer-review

  24. Segmentation for image guided interventions

    Niessen, WJ., 2008, Image Guided Surgery. Peters, T. & Cleary, K. (eds.). Springer Verlag, p. 219-241 500 p.

    Research output: Chapter in Book/Report/Conference proceedingChapterScientificpeer-review

  25. Two point minimum cost path approach for CTA coronary centerline extraction, 3D segmentation in the clinic: a grand challenge II

    Metz, CT., Schaap, M., van Walsum, T. & Niessen, WJ., 2008, Proceedings MICCAI 2008 workshop. nn (ed.). New York: MICCAI, p. 1-8 8 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  26. Volume preserving image registration via a post-processing stage

    Hameeteman, K., Veenland, JF. & Niessen, WJ., 2008, In : Proceedings of SPIE- International Society for Optical Engineering. 6914, p. 1-10 10 p.

    Research output: Contribution to journalConference articleScientificpeer-review

  27. White matter atrophy and lesion formation explain the loss of structural integrity of white matter in aging

    Vernooij, M. W., de Groot, M., van der Lugt, A., Ikram, MA., Krestin, GP., Hofman, A., Niessen, WJ. & Breteler, MM., 2008, In : NeuroImage. 15, 43(3), p. 470-477 8 p.

    Research output: Contribution to journalArticleScientificpeer-review

  28. 2007
  29. 3D X-ray image guidance in interventional radiology

    Niessen, WJ., van de Kraats, E. B., Baert, S. A. M. & van Walsum, T., 2007, Proc. 4th IEEE Int. Symposium on Biomedical Imaging: From Nano tot Macro. s.n. (ed.). IEEE Society, p. 1000-1003 4 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  30. A Variational model for level-set based cell tracking in time-lapse fluorescence microscopy images

    Dzyubachyk, O., Niessen, WJ. & Meijering, E., 2007, Proc. 4th IEEE Int. Symposium on Biomedical Imaging: From Nano tot Macro. s.n. (ed.). IEEE Society, p. 97-100 4 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  31. Advanced Particle Filtering for Multiple Object Tracking in Dynamic Fluorescence Microscopy Images

    Smal, I., Niessen, WJ. & Meijering, E., 2007, IEEE International Symposium on Biomedical Imaging: From Nano to Macro. s.n. (ed.). s.n.: IEEE Society, p. 1048-1051 4 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  32. Automactic segmentation of brain tissue and white matter lesions in MRI

    Boer, R., van der Lijn, F., Vrooman, HA., Vernooij, M. W., Ikram, MA., Breteler, MMB. & Niessen, WJ., 2007, 4th IEEE Int. Symposium on Biomedical Imaging: From Nano to Macro. s.n. (ed.). IEEE Society, p. 652-655 4 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  33. Automated localication of periventricular and subcortical white matter lesions

    van der Lijn, F., Vernooij, M. W., Arfan Ikram, M., Vrooman, HA., Rueckert, D., Hammers, A., Breteler, MMB. & Niessen, WJ., 2007, In : Proceedings of SPIE- International Society for Optical Engineering. 6512

    Research output: Contribution to journalConference articleScientificpeer-review

  34. Automatic segmentations of arteries through the skull base

    Manniesing, R. & Niessen, WJ., 2007, In : Proceedings of SPIE- International Society for Optical Engineering. 6512

    Research output: Contribution to journalConference articleScientificpeer-review

  35. Bayesian tracking of tubular structures and its application to carotid arteries in CTA

    Schaap, M., Manniesing, R., Smal, I., van Walsum, T., van der Lugt, A. & Niessen, WJ., 2007, In : Lecture Notes in Computer Science. p. 562-570 9 p.

    Research output: Contribution to journalArticleScientificpeer-review

  36. Combining graph cuts, atlas registration, and voxel classification for hippocampus segmentation in MR images

    van der Lijn, F., den Heijer, T., Breteler, MMB. & Niessen, WJ., 2007, Mathematical methods in biomedical image analysis- IN PRESS. Nielsen, M., Niessen, WJ. & Westin, CF. (eds.). IEEE Society, p. 1-5 5 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  37. Histogram-based selective deblurring to improve CT imaging of calcifications

    Rollano-Hijarrubia, E., Niessen, WJ., Weinans, H., van der Lugt, A. & Stokking, R., 2007, In : Investigative Radiology: a journal of clinical and laboratory research. 42, 1, p. 8-22 15 p.

    Research output: Contribution to journalArticleScientificpeer-review

  38. Image-guided vascular neurosurgery based on three-dimensional rotational angiography - Technical note

    Willems, PWA., van Walsum, T., Woerdeman, PA., van de Kraats, E. B., de Kort, GAP., Niessen, WJ. & van der Sprenkel, JWB., 2007, In : Journal of Neurosurgery. 106, 3, p. 510-506 3 p.

    Research output: Contribution to journalArticleScientificpeer-review

  39. Incidental findings on brain MRI in the general population

    Vernooij, M. W., Ikram, MA., Tanghe, HL., Vincent, AJPE., Hofman, A., Krestin, GP., Niessen, WJ., Breteler, MMB. & van der Lugt, A., 2007, In : New England Journal of Medicine. 357, 18, p. 1821-1828 8 p.

    Research output: Contribution to journalArticleScientificpeer-review

  40. Modeling friction, intrinsic curvature, and rotation of guide wires for simulation of minimally invasive vascular interventions

    Alderliesten, T., Konings, MK. & Niessen, WJ., 2007, In : IEEE Transactions on Biomedical Engineering. 54, 1, p. 29-38 10 p.

    Research output: Contribution to journalArticleScientificpeer-review

  41. Multi-spectral brain tissue segmentation using automatically trained k-Nearest-Neighbor classification

    Vrooman, HA., Cocosco, C. A., van der Lijn, F., Stokking, R., Ikram, MA., Vernooij, M. W., Breteler, MMB. & Niessen, WJ., 2007, In : NeuroImage. 37, 1, p. 71-81 11 p.

    Research output: Contribution to journalArticleScientificpeer-review

  42. Rao-blackwellizezd marginal particle filtering for multiple object tracking in molecular bioimaging

    Smal, I., Draegestein, K., Galjart, N., Niessen, WJ. & Meijering, E., 2007, In : Lecture Notes in Computer Science. p. 110-121 12 p.

    Research output: Contribution to journalArticleScientificpeer-review

  43. Semi-automatic coronary artery centerline extraction in computed tomography angiography data

    Metz, C., Schaap, M., van der Giessen, A., van Walsum, T. & Niessen, WJ., 2007, Proc. 4th IEEE Int. Symposium on Biomedical Imaging: From Nano to Macro. s.n. (ed.). IEEE Society, p. 856-859 4 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  44. Towards a real-time minimally-invasive vascular intervention simulation system

    Alderliesten, T., Bosman, PAN. & Niessen, WJ., 2007, In : IEEE Transactions on Medical Imaging. 26, 1, p. 128-132 5 p.

    Research output: Contribution to journalArticleScientificpeer-review

  45. Vessel Axis Tracking Using Topology constrained Surface Evolution

    Manniesing, R., Viergever, MA. & Niessen, WJ., 2007, In : IEEE Transactions on Medical Imaging. 26, 3, p. 309-316 8 p.

    Research output: Contribution to journalArticleScientificpeer-review

  46. 2006
  47. Accuracy Comparison of a 16 and 64 MDCT Scanner to Image Small High-density Structures

    Rollano-Hijarrubia, E., Stokking, R. & Niessen, WJ., 2006, In : Investigative Radiology: a journal of clinical and laboratory research. 41, 11, p. 781-792 12 p.

    Research output: Contribution to journalArticleScientificpeer-review

  48. Bayesian Tracking for Fluorescence Microscopic Imaging

    Smal, I., Niessen, WJ. & Meijering, E., 2006, From Nano to Macro. Christensen, G., Coatrieux, JL., Fessler, J., Kovacevic, J., Liang, ZP., Meijering, E., Moura, J., Murphy, B., Niessen, W., Roux, C., Unser, M. & Wilson, D. (eds.). Piscataway: IEEE Society, p. 550-553 4 p. (International Symposium on Biomedical Imaging. Proceedings; vol. 4).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  49. Imaging of Small High-Density Structures in CT: A Phantom Study

    Rollano-Hijarrubia, E., Stokking, R., van der Meer, F. & Niessen, WJ., 2006, In : Academic Radiology. 13, 7, p. 893-908 16 p.

    Research output: Contribution to journalArticleScientificpeer-review

  50. Level Set Based Cerebral Vasculature Segmentation and Diameter Quantification in CT Angiography

    Manniesing, R., Velthuis, BK., Leeuwen, MS., van der Schaaf, IC., van Laar, PJ. & Niessen, WJ., 2006, In : Medical Image Analysis. 10, 2, p. 200-214 15 p.

    Research output: Contribution to journalArticleScientificpeer-review

  51. Navigation With Three-Dimensional Rotational X-Ray Data for Transpedicular Percutaneous Needle Introduction: Feasibility and Comparison with Fluoroscopic Guidance

    van Walsum, T., van de Kraats, E. B., Voormolen, MHJ., Verlaan, J-J., Mali, WPT. & Niessen, WJ., 2006, In : Journal of Vascular and Interventional Radiology. 17, 9, p. 1511-1518 8 p.

    Research output: Contribution to journalArticleScientificpeer-review

  52. Quantification of Heterogeneity in Dynamic Contrast Enhanced MRI Data for Tumor Treatment Assessment

    Alic, L., Veenland, J., van Vliet, M., Dijke, CF., Eggermont, AMM. & Niessen, WJ., 2006, From Nano to Macro. Christensen, G., Coatrieux, JL., Fessler, J., Kovacevic, J., Liang, ZP., Meijering, E., Moura, J., Murphy, B., Niessen, WJ., Roux, C., Unser, M. & Wilson, D. (eds.). Piscataway: IEEE Society, p. 944-947 4 p. (International Symposium on Biomedical Imaging. Proceedings; vol. 4).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  53. Quantitative evaluation of three calibration methods for 3-D freehand ultrasound

    Rousseau, F., Hellier, P., Letteboer, MM., Niessen, WJ. & Barillot, C., 2006, In : IEEE Transactions on Medical Imaging. 25, 11, p. 1492-1501 10 p.

    Research output: Contribution to journalArticleScientificpeer-review

  54. Robustness and complexity of a minimally invasive vascular intervention simulation system

    Alderliesten, T., Konings, MK. & Niessen, WJ., 2006, In : Medical Physics. 33, 12, p. 4758-4769 12 p.

    Research output: Contribution to journalArticleScientificpeer-review

  55. Shape Constrained Vessel Centerline Extraction by Integrating Surface Evolution and Topology Analysis

    Manniesing, R. & Niessen, WJ., 2006, From Nano to Macro. Christensen, G., Coatrieux, JL., Fessler, J., Kovacevic, J., Liang, ZP., Meijering, E., Moura, J., Murphy, B., Niessen, W., Roux, C., Unser, M. & Wilson, D. (eds.). Piscataway: IEEE Society, p. 165-168 4 p. (International Symposium on Biomedical Imaging. Proceedings; vol. 4).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  56. Three-Dimensional Rotational X-Ray Navigation for Needle Guidance in Percutaneous Vertebroplasty: An Accuracy Study

    van de Kraats, E. B., van Walsum, T., Verlaan, J-J., Voormolen, MHJ., Mali, WPT. & Niessen, WJ., 2006, In : Spine (Philadelphia, 1976). 31, 12, p. 1359-1364 6 p.

    Research output: Contribution to journalArticleScientificpeer-review

  57. Vascular image analysis: From vessel enhancement to intravascular invterventions

    Niessen, WJ., 2006, ASCI 2006: Proceedings of the 12th annual conference of the Advanced School for Computing and Imaging. Lelieveldt, B., Haverkort, B., de Laat, C. T. A. M. & Heijnsdijk, J. W. J. (eds.). Delft: ASCI, p. 8-8 1 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  58. Vessel Enhancing Diffusion: A Scale Space Representation of Vessel Structures

    Manniesing, R., Viergever, MA. & Niessen, WJ., 2006, In : Medical Image Analysis. 10, 6, p. 815-825 11 p.

    Research output: Contribution to journalArticleScientificpeer-review

  59. kNN-Based Multi-Spectral MRI Brain Tissue Classification: Manual Training versus Automatic Atlas-based Training

    Vrooman, HA., Cocosco, C. A., Stokking, R., Ikram, MA., Vernooij, MW., Breteler, MM. & Niessen, WJ., 2006, In : Proceedings of SPIE- International Society for Optical Engineering. 6144, p. 944-947 4 p.

    Research output: Contribution to journalConference articleScientificpeer-review

  60. kNN-based Multi-Spectral MRI Brain Tissue Classification: Manual Training versus Automated Atlas-based Training

    Vrooman, HA., Cocosco, C. A., Stokking, R., Ikram, MA., Vernooij, MW., Breteler, MM. & Niessen, WJ., 2006, ASCI 2006: Proceedings of the 12th annual conference of the Advanced School for Computing and Imaging. Lelieveldt, B. P. F., Haverkort, B., de Laat, C. T. A. M. & Heijnsdijk, J. W. J. (eds.). Delft: ASCI, p. 440-447 8 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

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