Cluster-based Apache Spark implementation of the GATK DNA analysis pipeline

H Mushtaq; Z Al-Ars

doi:10.1109/BIBM.2015.7359893

Cluster-based Apache Spark implementation of the GATK DNA analysis pipeline

Computer Engineering

Research output: Chapter in Book/Conference proceedings/Edited volume › Conference contribution › Scientific › peer-review

29 Citations (Scopus)

Original language	English
Title of host publication	Proceedings of the International Conference on Bioinformatics and Biomedicine
Editors	J Huan, S Miyano, A Shehu
Place of Publication	Piscataway
Publisher	IEEE Society
Pages	1471-1477
Number of pages	7
ISBN (Print)	978-1-4673-6798-1
DOIs	https://doi.org/10.1109/BIBM.2015.7359893
Publication status	Published - 2015
Event	2015 IEEE International Conference on Bioinformatics and Biomedicine, BIBM - Duration: 9 Nov 2015 → 12 Nov 2015

Publication series

Name
Publisher	IEEE

Conference

Conference	2015 IEEE International Conference on Bioinformatics and Biomedicine, BIBM
Abbreviated title	BIBM
Period	9/11/15 → 12/11/15

Bibliographical note

harvest

Access to Document

10.1109/BIBM.2015.7359893

Cite this

@inproceedings{d4f08155b0b6487d941c4d331b4bfb70,

title = "Cluster-based Apache Spark implementation of the GATK DNA analysis pipeline",

author = "H Mushtaq and Z Al-Ars",

note = "harvest; 2015 IEEE International Conference on Bioinformatics and Biomedicine, BIBM , BIBM ; Conference date: 09-11-2015 Through 12-11-2015",

year = "2015",

doi = "10.1109/BIBM.2015.7359893",

language = "English",

isbn = "978-1-4673-6798-1",

publisher = "IEEE Society",

pages = "1471--1477",

editor = "J Huan and S Miyano and A Shehu",

booktitle = "Proceedings of the International Conference on Bioinformatics and Biomedicine",

}

Mushtaq, H & Al-Ars, Z 2015, Cluster-based Apache Spark implementation of the GATK DNA analysis pipeline. in J Huan, S Miyano & A Shehu (eds), Proceedings of the International Conference on Bioinformatics and Biomedicine. IEEE Society, Piscataway, pp. 1471-1477, 2015 IEEE International Conference on Bioinformatics and Biomedicine, BIBM , 9/11/15. https://doi.org/10.1109/BIBM.2015.7359893

Cluster-based Apache Spark implementation of the GATK DNA analysis pipeline. / Mushtaq, H; Al-Ars, Z.
Proceedings of the International Conference on Bioinformatics and Biomedicine. ed. / J Huan; S Miyano; A Shehu. Piscataway: IEEE Society, 2015. p. 1471-1477.

Research output: Chapter in Book/Conference proceedings/Edited volume › Conference contribution › Scientific › peer-review

TY - GEN

T1 - Cluster-based Apache Spark implementation of the GATK DNA analysis pipeline

AU - Mushtaq, H

AU - Al-Ars, Z

N1 - harvest

PY - 2015

Y1 - 2015

U2 - 10.1109/BIBM.2015.7359893

DO - 10.1109/BIBM.2015.7359893

M3 - Conference contribution

SN - 978-1-4673-6798-1

SP - 1471

EP - 1477

BT - Proceedings of the International Conference on Bioinformatics and Biomedicine

A2 - Huan, J

A2 - Miyano, S

A2 - Shehu, A

PB - IEEE Society

CY - Piscataway

T2 - 2015 IEEE International Conference on Bioinformatics and Biomedicine, BIBM

Y2 - 9 November 2015 through 12 November 2015

ER -