Construction of correlation networks with explicit time-slices using time-lagged, variable interval standard and partial correlation coefficients

W Meuleman; MCM Welten; FJ Verbeek

Construction of correlation networks with explicit time-slices using time-lagged, variable interval standard and partial correlation coefficients

W Meuleman, MCM Welten, FJ Verbeek

Multimedia Computing

Research output: Chapter in Book/Conference proceedings/Edited volume › Conference contribution › Scientific › peer-review

Abstract

Theconstructionofgeneregulatorymodelsfrommicroarraytime-seriesdatahasreceivedmuchattention.Hereweproposeamethodthatextendsstandardcorrelationnetworkstoincorporateexplicittimeslices.Themethodisappliedtoatime-seriesdatasetofastudyongeneexpressioninthedevelopmentalphaseofzebra¿sh.Resultsshowthatthemethodisabletodistinguishrealrelationsbetweengenesfromthedata.Theserelationsareexplicitlyplacedintime,allowingforabetterunderstandingofgeneregulation.ThemethodanddatanormalisationprocedurehavebeenimplementedusingtheRstatisticallanguageandareavailablefromhttp://zebrafish.liacs.nl/supplements.html.

Original language	Undefined/Unknown
Title of host publication	Computational Life Sciences II
Editors	MR Berthold, R. Glen, I. Fischer
Place of Publication	Berlin-Heidelberg
Publisher	Springer
Pages	236-246
Number of pages	11
ISBN (Print)	3-540-45767-4
Publication status	Published - 2006
Event	Second International Symposium, CompLife 2006, Cambridge, UK - Berlin-Heidelberg Duration: 27 Sept 2006 → 29 Sept 2006

Publication series

Name
Publisher	Springer

Name
Volume	4216

Conference

Conference	Second International Symposium, CompLife 2006, Cambridge, UK
Period	27/09/06 → 29/09/06

Bibliographical note

Dit is opgenomen in Lecturen Notes in Bioinformatics (4216) maar dit komt niet voor op de lijst en het lukt mij ook niet om het toe te voegen

Keywords

conference contrib. refereed
Conf.proc. > 3 pag

Cite this

@inproceedings{6a8cc71346484623aad17f297ac42978,

title = "Construction of correlation networks with explicit time-slices using time-lagged, variable interval standard and partial correlation coefficients",

abstract = "Theconstructionofgeneregulatorymodelsfrommicroarraytime-seriesdatahasreceivedmuchattention.Hereweproposeamethodthatextendsstandardcorrelationnetworkstoincorporateexplicittimeslices.Themethodisappliedtoatime-seriesdatasetofastudyongeneexpressioninthedevelopmentalphaseofzebra¿sh.Resultsshowthatthemethodisabletodistinguishrealrelationsbetweengenesfromthedata.Theserelationsareexplicitlyplacedintime,allowingforabetterunderstandingofgeneregulation.ThemethodanddatanormalisationprocedurehavebeenimplementedusingtheRstatisticallanguageandareavailablefromhttp://zebrafish.liacs.nl/supplements.html.",

keywords = "conference contrib. refereed, Conf.proc. > 3 pag",

author = "W Meuleman and MCM Welten and FJ Verbeek",

note = "Dit is opgenomen in Lecturen Notes in Bioinformatics (4216) maar dit komt niet voor op de lijst en het lukt mij ook niet om het toe te voegen; Second International Symposium, CompLife 2006, Cambridge, UK ; Conference date: 27-09-2006 Through 29-09-2006",

year = "2006",

language = "Undefined/Unknown",

isbn = "3-540-45767-4",

publisher = "Springer",

pages = "236--246",

editor = "MR Berthold and R. Glen and I. Fischer",

booktitle = "Computational Life Sciences II",

}

Meuleman, W, Welten, MCM & Verbeek, FJ 2006, Construction of correlation networks with explicit time-slices using time-lagged, variable interval standard and partial correlation coefficients. in MR Berthold, R Glen & I Fischer (eds), Computational Life Sciences II. Springer, Berlin-Heidelberg, pp. 236-246, Second International Symposium, CompLife 2006, Cambridge, UK, 27/09/06.

Construction of correlation networks with explicit time-slices using time-lagged, variable interval standard and partial correlation coefficients. / Meuleman, W; Welten, MCM; Verbeek, FJ.
Computational Life Sciences II. ed. / MR Berthold; R. Glen; I. Fischer. Berlin-Heidelberg: Springer, 2006. p. 236-246.

Research output: Chapter in Book/Conference proceedings/Edited volume › Conference contribution › Scientific › peer-review

TY - GEN

T1 - Construction of correlation networks with explicit time-slices using time-lagged, variable interval standard and partial correlation coefficients

AU - Meuleman, W

AU - Welten, MCM

AU - Verbeek, FJ

N1 - Dit is opgenomen in Lecturen Notes in Bioinformatics (4216) maar dit komt niet voor op de lijst en het lukt mij ook niet om het toe te voegen

PY - 2006

Y1 - 2006

N2 - Theconstructionofgeneregulatorymodelsfrommicroarraytime-seriesdatahasreceivedmuchattention.Hereweproposeamethodthatextendsstandardcorrelationnetworkstoincorporateexplicittimeslices.Themethodisappliedtoatime-seriesdatasetofastudyongeneexpressioninthedevelopmentalphaseofzebra¿sh.Resultsshowthatthemethodisabletodistinguishrealrelationsbetweengenesfromthedata.Theserelationsareexplicitlyplacedintime,allowingforabetterunderstandingofgeneregulation.ThemethodanddatanormalisationprocedurehavebeenimplementedusingtheRstatisticallanguageandareavailablefromhttp://zebrafish.liacs.nl/supplements.html.

AB - Theconstructionofgeneregulatorymodelsfrommicroarraytime-seriesdatahasreceivedmuchattention.Hereweproposeamethodthatextendsstandardcorrelationnetworkstoincorporateexplicittimeslices.Themethodisappliedtoatime-seriesdatasetofastudyongeneexpressioninthedevelopmentalphaseofzebra¿sh.Resultsshowthatthemethodisabletodistinguishrealrelationsbetweengenesfromthedata.Theserelationsareexplicitlyplacedintime,allowingforabetterunderstandingofgeneregulation.ThemethodanddatanormalisationprocedurehavebeenimplementedusingtheRstatisticallanguageandareavailablefromhttp://zebrafish.liacs.nl/supplements.html.

KW - conference contrib. refereed

KW - Conf.proc. > 3 pag

UR - http://www.springerlink.com/content/e74888813443874n/fulltext.pdf

M3 - Conference contribution

SN - 3-540-45767-4

SP - 236

EP - 246

BT - Computational Life Sciences II

A2 - Berthold, MR

A2 - Glen, R.

A2 - Fischer, I.

PB - Springer

CY - Berlin-Heidelberg

T2 - Second International Symposium, CompLife 2006, Cambridge, UK

Y2 - 27 September 2006 through 29 September 2006

ER -

Construction of correlation networks with explicit time-slices using time-lagged, variable interval standard and partial correlation coefficients

Abstract

Publication series

Conference

Bibliographical note

Keywords

Other files and links

Cite this